Strain Fitness in Pseudomonas putida KT2440 around PP_1977

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,238,808	+		PP_1976	0.20	-0.5
2,238,919	+		PP_1976	0.30	-0.3
2,238,920	-		PP_1976	0.30	+1.3
2,239,460	+		PP_1976	0.76	-0.4
2,239,461	-		PP_1976	0.76	+0.3
2,239,507	+		PP_1976	0.80	-0.0
2,239,508	-		PP_1976	0.80	+0.4
2,239,508	-		PP_1976	0.80	+0.4
2,239,508	-		PP_1976	0.80	+0.0
2,239,528	+		PP_1976	0.82	-0.7
2,239,547	-		PP_1976	0.84	+1.9
2,239,635	+				-0.2
2,241,268	+				+1.0
2,241,352	+				+0.8
2,241,391	+				-0.6
2,241,762	+				-2.9
2,241,778	+				+1.1
2,241,874	+		PP_t27	0.86	+0.2
2,242,026	+				+1.0
2,242,072	-		PP_t29	0.11	-1.1
2,242,072	-				-1.5
2,242,072	-		PP_t29	0.11	+1.1
2,242,072	-		PP_t29	0.11	-1.3
2,242,129	+		PP_t29	0.86	-0.4
2,242,180	-				+2.4