Strain Fitness in Pseudomonas putida KT2440 around PP_1966

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,227,443	-				+0.1
2,227,512	+				-0.8
2,227,526	+				-0.2
2,227,730	+				-0.1
2,227,730	+				-0.6
2,227,763	+				-0.1
2,227,818	+				+1.4
2,227,818	+				-0.4
2,228,860	-				+1.1
2,228,872	+				-0.1
2,228,872	+				+0.1
2,229,030	+		PP_1967	0.21	-2.1
2,229,030	+		PP_1967	0.21	-0.7
2,229,257	+		PP_1967	0.50	+0.8
2,229,257	+		PP_1967	0.50	+0.8
2,229,336	-		PP_1967	0.60	+1.6
2,229,378	+		PP_1967	0.66	-1.0
2,229,378	+		PP_1967	0.66	+0.9
2,229,381	+		PP_1967	0.66	-0.1
2,229,381	+		PP_1967	0.66	-0.6
2,229,381	+		PP_1967	0.66	+0.3
2,229,382	-		PP_1967	0.66	+0.5
2,229,531	+		PP_1967	0.85	+1.2
2,229,532	-		PP_1967	0.85	+1.6
2,229,552	+		PP_1967	0.88	-0.2
2,229,552	+		PP_1967	0.88	-1.7
2,229,553	-		PP_1967	0.88	+2.4
2,229,553	-		PP_1967	0.88	+1.0
2,229,579	+				+0.9
2,229,579	+				+0.3
2,229,579	+				-0.2
2,229,579	+				-0.5
2,229,754	-				-0.8
2,229,769	-				+1.2
2,229,779	+				-1.3
2,229,779	+				-0.5