Strain Fitness in Pseudomonas putida KT2440 around PP_1925

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,171,515	-				-0.5
2,171,515	-				-1.0
2,171,552	+				-0.1
2,171,553	-				-0.7
2,171,563	+				-0.1
2,171,563	+				-0.4
2,171,563	+				-0.4
2,171,563	+				-0.4
2,171,563	+				-1.3
2,171,564	-				+0.4
2,171,564	-				-0.6
2,171,564	-				+0.4
2,171,564	-				+2.1
2,171,647	-				-1.9
2,171,647	-				+0.4
2,171,736	-				-0.4
2,171,826	+				-0.3
2,171,826	+				-0.4
2,171,826	+				-0.6
2,171,826	+				-0.5
2,171,826	+				+1.3
2,171,827	-				+0.1
2,171,827	-				+1.0
2,171,827	-				+0.3
2,171,869	+				-0.8
2,171,892	+				+0.2
2,171,901	+				+1.8
2,171,901	+				-0.6
2,171,901	+				-0.0
2,171,902	-				+1.6
2,171,902	-				-0.8
2,171,999	+		PP_1924	0.23	+0.9
2,172,119	-		PP_1924	0.45	+0.7
2,172,119	-		PP_1924	0.45	+1.2
2,172,119	-		PP_1924	0.45	-0.7
2,172,119	-		PP_1924	0.45	-1.5
2,172,163	+		PP_1924	0.53	-0.4
2,172,163	+		PP_1924	0.53	+0.7
2,172,163	+		PP_1924	0.53	+0.3
2,172,164	-		PP_1924	0.53	+0.7
2,172,164	-		PP_1924	0.53	+0.4
2,172,221	-		PP_1924	0.63	+1.5
2,172,227	-		PP_1924	0.64	+0.0
2,172,234	+		PP_1924	0.65	+0.6
2,172,234	+		PP_1924	0.65	-1.3
2,172,263	-		PP_1924	0.70	+1.2
2,172,338	+		PP_1924	0.84	+0.1
2,172,339	-		PP_1924	0.84	-1.3
2,172,339	-		PP_1924	0.84	+1.5
2,172,339	-		PP_1924	0.84	+0.5
2,172,364	+		PP_1924	0.88	+0.1
2,172,364	+		PP_1924	0.88	-0.0
2,172,411	-				-0.7
2,172,460	+				-0.3
2,172,460	+				-0.4
2,172,567	+		PP_1925	0.13	+0.5
2,172,568	-		PP_1925	0.14	-0.8
2,172,655	-		PP_1925	0.22	+0.7
2,172,736	+		PP_1925	0.29	-0.7
2,172,792	+		PP_1925	0.34	+0.4
2,173,031	+		PP_1925	0.56	-0.2
2,173,032	-		PP_1925	0.56	-0.5
2,173,032	-		PP_1925	0.56	+0.8
2,173,079	+		PP_1925	0.61	-2.4
2,173,091	+		PP_1925	0.62	-0.5
2,173,092	-		PP_1925	0.62	+0.2
2,173,160	-		PP_1925	0.68	+1.4
2,173,215	+		PP_1925	0.73	+0.9
2,173,238	+		PP_1925	0.75	+1.6
2,173,238	+		PP_1925	0.75	+1.5
2,173,238	+		PP_1925	0.75	+0.9
2,173,238	+		PP_1925	0.75	+0.1
2,173,239	-		PP_1925	0.76	-1.8
2,173,239	-		PP_1925	0.76	+0.4
2,173,250	+		PP_1925	0.77	+3.7
2,173,250	+		PP_1925	0.77	+2.5
2,173,250	+		PP_1925	0.77	+0.5
2,173,251	-		PP_1925	0.77	-0.0
2,173,279	-		PP_1925	0.79	+1.7
2,173,555	-				+0.8
2,173,555	-				+1.7
2,173,555	-				-1.6
2,173,555	-				+0.7
2,173,555	-				-0.0
2,173,555	-				+0.3
2,173,888	+		PP_1926	0.72	+0.4
2,173,888	+		PP_1926	0.72	-0.5
2,173,889	-		PP_1926	0.72	+0.7
2,173,889	-		PP_1926	0.72	+1.6
2,173,922	-		PP_1926	0.79	-1.6
2,173,922	-		PP_1926	0.79	+2.0
2,173,980	-				+0.2
2,174,034	-				+1.6
2,174,043	-				+0.4
2,174,067	+				+1.4
2,174,067	+				+3.1
2,174,098	+				-1.5
2,174,106	+				+0.8
2,174,107	-				+0.3
2,174,107	-				+0.6
2,174,113	+		PP_1927	0.10	+0.5
2,174,114	-		PP_1927	0.11	-1.0
2,174,114	-		PP_1927	0.11	+1.4
2,174,267	+		PP_1927	0.32	-0.5
2,174,267	+		PP_1927	0.32	+0.3
2,174,267	+		PP_1927	0.32	+0.8
2,174,267	+		PP_1927	0.32	-1.3
2,174,268	-		PP_1927	0.32	+0.4
2,174,268	-		PP_1927	0.32	-2.1
2,174,268	-		PP_1927	0.32	-1.2
2,174,268	-		PP_1927	0.32	+0.2
2,174,309	+		PP_1927	0.37	+0.4
2,174,379	+		PP_1927	0.47	+0.4
2,174,380	-		PP_1927	0.47	+0.7