Strain Fitness in Pseudomonas putida KT2440 around PP_1871

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,093,230	+				-1.4
2,093,230	+				+1.7
2,093,251	+				+0.3
2,093,256	-				+0.5
2,093,256	-				-1.0
2,093,386	+		PP_1870	0.11	-0.5
2,093,387	-		PP_1870	0.11	+0.2
2,093,398	+		PP_1870	0.13	+0.6
2,093,398	+		PP_1870	0.13	-0.5
2,093,399	-		PP_1870	0.13	+1.0
2,093,498	+		PP_1870	0.28	+0.6
2,093,498	+		PP_1870	0.28	-1.0
2,093,666	+		PP_1870	0.54	-0.3
2,093,674	+		PP_1870	0.55	+0.4
2,093,674	+		PP_1870	0.55	+0.1
2,093,675	-		PP_1870	0.55	-0.0
2,093,722	+		PP_1870	0.63	-1.8
2,093,722	+		PP_1870	0.63	-0.9
2,093,722	+		PP_1870	0.63	-0.9
2,093,723	-				-1.7
2,093,723	-		PP_1870	0.63	-1.2
2,093,723	-		PP_1870	0.63	-0.5
2,093,724	+		PP_1870	0.63	-1.4
2,093,724	+		PP_1870	0.63	+0.5
2,093,725	-		PP_1870	0.63	-2.4
2,093,725	-		PP_1870	0.63	-1.5
2,093,947	+				-0.5
2,093,948	-				-0.5
2,093,948	-				+0.2
2,093,970	+				-0.8
2,093,971	-				-1.9
2,094,357	+		PP_1871	0.33	-0.5
2,094,357	+		PP_1871	0.33	-1.3
2,094,357	+		PP_1871	0.33	-2.0
2,094,358	-		PP_1871	0.33	-4.1
2,094,358	-		PP_1871	0.33	-2.9
2,094,360	+		PP_1871	0.34	-2.8
2,094,360	+		PP_1871	0.34	-1.1
2,094,361	-		PP_1871	0.34	-1.4
2,094,361	-		PP_1871	0.34	-2.4
2,094,361	-		PP_1871	0.34	-1.4
2,094,361	-		PP_1871	0.34	-2.4
2,094,621	+		PP_1871	0.63	-1.2
2,094,621	+		PP_1871	0.63	-0.2
2,094,634	+		PP_1871	0.64	-2.3
2,094,889	+				-0.7
2,094,889	+				-3.6
2,094,889	+				-1.2
2,094,890	-				-1.0
2,094,926	+				-2.1
2,094,927	-				-1.5
2,094,956	+				-1.8
2,094,956	+				-2.4
2,094,957	-				-1.8
2,094,957	-				-0.0
2,094,985	+				-1.9
2,094,995	+				-0.2
2,094,995	+				-1.8
2,094,996	-				+2.1
2,094,996	-				+3.1
2,094,997	+				-2.0
2,094,997	+				-0.3
2,094,997	+				-4.2
2,094,997	+				-1.7
2,094,997	+				-1.6
2,094,997	+				-3.1
2,094,998	-				+3.1
2,094,998	-				-0.3
2,094,998	-				+1.5
2,094,998	-				+0.8
2,094,998	-				+2.0
2,094,998	-				+2.1
2,094,998	-				+1.5
2,094,998	-				+2.6
2,094,999	+				-2.0
2,094,999	+				-1.0
2,094,999	+				-2.0
2,094,999	+				-2.6
2,094,999	+				-2.7
2,094,999	+				-1.9
2,094,999	+				-1.5
2,094,999	+				-3.3
2,094,999	+				-0.5
2,095,000	-				+2.6
2,095,000	-				+1.5
2,095,000	-				+0.7
2,095,000	-				+1.4
2,095,000	-				+1.5
2,095,000	-				+0.0
2,095,000	-				+2.1
2,095,000	-				+1.6
2,095,000	-				+2.2
2,095,000	-				+3.5
2,095,000	-				+3.3
2,095,000	-				+1.3
2,095,000	-				+2.8
2,095,033	+				-2.5
2,095,033	+				-0.9
2,095,034	-				+2.5
2,095,058	-				+1.3
2,095,058	-				+2.4
2,095,105	+				-1.6
2,095,106	-				+1.3
2,095,241	+				-0.3
2,095,267	+				+0.4
2,095,267	+				+0.4
2,095,389	+		PP_1872	0.10	-2.2
2,095,389	+		PP_1872	0.10	-0.7
2,095,483	+		PP_1872	0.18	+0.1
2,095,483	+		PP_1872	0.18	-0.9
2,095,484	-		PP_1872	0.18	-2.2
2,095,484	-		PP_1872	0.18	-1.5
2,095,540	+		PP_1872	0.23	+0.5
2,095,540	+		PP_1872	0.23	-0.8
2,095,541	-		PP_1872	0.23	-2.1
2,095,541	-		PP_1872	0.23	-0.5
2,095,541	-		PP_1872	0.23	-1.7
2,095,541	-		PP_1872	0.23	-0.0
2,095,691	-		PP_1872	0.35	-1.5
2,095,691	-		PP_1872	0.35	-0.2
2,095,691	-		PP_1872	0.35	-0.3
2,095,691	-		PP_1872	0.35	-2.7
2,095,691	-		PP_1872	0.35	-1.1
2,095,852	+		PP_1872	0.48	+1.5