Strain Fitness in Pseudomonas putida KT2440 around PP_1718

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,916,168	+		PP_1715	0.70	+1.2
1,916,346	+				-1.7
1,916,347	-				+0.5
1,916,352	-				+0.2
1,916,411	+				+1.8
1,916,418	+				-0.8
1,916,418	+				-0.4
1,916,476	+		PP_1716	0.19	-1.3
1,916,476	+		PP_1716	0.19	-1.8
1,916,477	-		PP_1716	0.19	+0.2
1,916,650	+				+0.0
1,916,836	-		PP_1717	0.24	+0.5
1,917,093	+				-1.3
1,917,094	-				-1.3
1,917,094	-				-1.5
1,917,100	-				+0.5
1,917,136	+				+0.6
1,917,136	+				+0.9
1,917,145	+				-0.2
1,917,145	+				-1.4
1,917,145	+				-0.4
1,917,232	+				-0.6
1,917,244	+				-0.1
1,917,524	+		PP_1718	0.35	-0.8
1,917,525	-		PP_1718	0.35	+1.1
1,917,525	-		PP_1718	0.35	+0.2
1,917,633	+		PP_1718	0.45	-0.1
1,917,633	+		PP_1718	0.45	-1.2
1,917,634	-		PP_1718	0.45	-0.4
1,917,634	-		PP_1718	0.45	-1.4
1,917,918	-		PP_1718	0.72	-1.0
1,918,056	+		PP_1718	0.84	-2.9
1,918,056	+		PP_1718	0.84	-0.6
1,918,057	-		PP_1718	0.84	-1.9
1,918,087	-		PP_1718	0.87	+1.5
1,918,123	+				+1.7
1,918,123	+				-0.5
1,918,128	+				+0.4
1,918,128	+				+1.0
1,918,129	-				+0.9
1,918,129	-				-3.0
1,918,170	+				+1.8
1,918,171	-				-1.6
1,918,171	-				+0.3
1,918,242	+				-0.7
1,918,243	-				+0.9
1,918,275	-				+0.2
1,918,275	-				+1.4
1,918,343	+				-0.3
1,918,343	+				+1.2
1,918,343	+				-0.9
1,918,344	-				-0.3
1,918,376	+				-2.4
1,918,376	+				-1.9
1,918,409	+				-3.7
1,918,409	+				-3.2
1,918,431	+				-4.4
1,918,431	+				-4.0
1,918,432	-				-1.6
1,918,637	+		PP_1719	0.14	-3.2
1,918,638	-		PP_1719	0.14	-1.7
1,918,967	+		PP_1719	0.30	-2.7
1,918,967	+		PP_1719	0.30	-3.3
1,918,967	+		PP_1719	0.30	-3.5
1,918,968	-		PP_1719	0.30	-2.5
1,919,045	+		PP_1719	0.33	-1.2
1,919,045	+		PP_1719	0.33	-3.6
1,919,045	+		PP_1719	0.33	-1.6
1,919,046	-		PP_1719	0.33	-2.2