Strain Fitness in Pseudomonas putida KT2440 around PP_1699

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,892,891	+		PP_1698	0.24	-0.6
1,893,008	-		PP_1698	0.33	-0.4
1,893,008	-		PP_1698	0.33	-0.5
1,893,058	+		PP_1698	0.37	+0.6
1,893,058	+		PP_1698	0.37	+0.9
1,893,059	-		PP_1698	0.37	+1.1
1,893,446	-		PP_1698	0.68	+0.6
1,893,446	-		PP_1698	0.68	-1.8
1,893,446	-		PP_1698	0.68	-1.8
1,893,489	+				+0.4
1,893,489	+		PP_1698	0.71	+1.1
1,893,490	-		PP_1698	0.71	-0.8
1,893,506	+		PP_1698	0.72	+1.1
1,893,507	-		PP_1698	0.72	+0.0
1,893,507	-		PP_1698	0.72	-0.5
1,893,507	-		PP_1698	0.72	+0.0
1,893,507	-		PP_1698	0.72	-0.1
1,893,529	+		PP_1698	0.74	-0.1
1,893,529	+		PP_1698	0.74	+1.4
1,893,530	-		PP_1698	0.74	+0.3
1,893,653	+		PP_1698	0.84	+0.4
1,893,759	-				+0.9
1,893,857	+				+1.8
1,893,858	-				-1.8
1,893,874	+				-1.0
1,893,874	+				-1.2
1,893,874	+				+0.7
1,893,874	+				+2.9
1,893,875	-				+0.1
1,893,986	+		PP_1699	0.13	-1.3
1,893,986	+		PP_1699	0.13	-0.3
1,893,987	-		PP_1699	0.13	+0.7
1,894,047	+		PP_1699	0.20	-1.1
1,894,048	-		PP_1699	0.21	-0.3
1,894,048	-		PP_1699	0.21	-1.5
1,894,201	-		PP_1699	0.39	-1.9
1,894,478	+		PP_1699	0.72	+0.6
1,894,479	-		PP_1699	0.72	-1.1
1,894,479	-		PP_1699	0.72	-0.9
1,894,550	+		PP_1699	0.80	-3.1
1,894,720	+				-0.5
1,894,721	-				+1.2
1,894,763	+				+1.0
1,895,062	+		PP_1700	0.15	+0.5
1,895,266	-		PP_1700	0.25	+0.0
1,895,394	+		PP_1700	0.32	-1.7
1,895,395	-		PP_1700	0.32	+1.0
1,895,395	-		PP_1700	0.32	-0.6
1,895,395	-		PP_1700	0.32	+0.5
1,895,443	-		PP_1700	0.34	-0.8
1,895,613	+		PP_1700	0.43	+0.3
1,895,613	+		PP_1700	0.43	+0.5
1,895,614	-		PP_1700	0.43	+2.0
1,895,635	-		PP_1700	0.44	-0.3