Strain Fitness in Pseudomonas putida KT2440 around PP_1696

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,889,413	+		PP_1695	0.75	-2.7
1,889,414	-		PP_1695	0.75	-2.7
1,889,414	-		PP_1695	0.75	-1.4
1,889,414	-		PP_1695	0.75	-4.2
1,889,474	+		PP_1695	0.77	-2.0
1,889,769	+		PP_1695	0.86	-1.9
1,889,770	-		PP_1695	0.86	-2.4
1,889,779	-		PP_1695	0.86	-4.2
1,889,853	+		PP_1695	0.88	+0.6
1,889,853	+		PP_1695	0.88	-2.4
1,889,853	+		PP_1695	0.88	-3.7
1,889,854	-		PP_1695	0.88	-4.0
1,889,854	-		PP_1695	0.88	-2.8
1,889,882	-		PP_1695	0.89	-2.0
1,889,882	-		PP_1695	0.89	-1.5
1,889,882	-		PP_1695	0.89	-2.8
1,890,056	-				-2.3
1,890,056	-				-1.4
1,890,128	-				-3.1
1,890,128	-				-2.2
1,890,148	+				-2.1
1,890,148	+				-1.9
1,890,199	+				-3.2
1,890,199	+				-2.2
1,890,200	-				-2.3
1,890,227	+				-0.7
1,890,227	+				-4.3
1,890,227	+				-2.4
1,890,228	-				-3.2
1,890,228	-				-2.5
1,890,229	+				-2.0
1,890,229	+				-3.1
1,890,229	+				-1.9
1,890,229	+				-2.7
1,890,229	+				-0.3
1,890,230	-				-3.4
1,890,230	-				-4.8
1,890,230	-				-3.0
1,890,230	-				-2.1
1,890,230	-				-2.2
1,890,230	-				-2.2
1,890,230	-				-1.3
1,890,295	-				-2.1
1,890,358	+				+0.7
1,890,359	-				-0.4
1,890,359	-				-1.7
1,890,359	-				-0.2
1,890,425	-				-0.9
1,890,463	+				-2.1
1,890,464	-				-2.7
1,890,464	-				-2.6
1,890,464	-				-3.3
1,890,489	+				+1.2
1,890,557	-		PP_1696	0.13	-0.9
1,890,560	-		PP_1696	0.14	-0.7
1,890,560	-		PP_1696	0.14	-1.3
1,890,560	-		PP_1696	0.14	-1.6
1,890,560	-		PP_1696	0.14	-0.4
1,890,596	+		PP_1696	0.17	-0.1
1,890,604	+		PP_1696	0.17	+0.6
1,890,604	+		PP_1696	0.17	+1.4
1,890,604	+		PP_1696	0.17	+0.3
1,890,604	+		PP_1696	0.17	+1.7
1,890,605	-		PP_1696	0.17	-1.3
1,890,605	-		PP_1696	0.17	+0.1
1,890,605	-		PP_1696	0.17	-1.4
1,890,865	+		PP_1696	0.40	-1.4
1,890,878	-		PP_1696	0.41	+0.3
1,890,878	-		PP_1696	0.41	+1.3
1,890,878	-		PP_1696	0.41	-2.1
1,890,927	-		PP_1696	0.45	-0.6
1,891,156	+		PP_1696	0.64	-0.3
1,891,156	+		PP_1696	0.64	-3.0
1,891,156	+		PP_1696	0.64	+0.1
1,891,157	-		PP_1696	0.64	-1.7
1,891,157	-		PP_1696	0.64	+0.4
1,891,197	+		PP_1696	0.68	-0.4
1,891,332	-		PP_1696	0.79	-1.6
1,891,384	+		PP_1696	0.84	-0.2
1,891,396	-		PP_1696	0.85	-1.4
1,891,483	+				-0.7
1,891,484	-				+1.0
1,891,564	-				+0.0
1,891,617	+				+0.5
1,891,617	+				-1.6
1,891,617	+				+0.8
1,891,617	+				-0.1
1,891,617	+				-1.0
1,891,617	+				-0.7
1,891,618	-				+1.3
1,891,618	-				-1.9
1,891,618	-				+0.1
1,891,727	+				+0.5
1,891,728	-				-1.2
1,891,735	+				+0.1
1,891,735	+				+0.5
1,891,738	-				-1.5
1,892,051	+		PP_1697	0.40	-1.8
1,892,052	-		PP_1697	0.40	-1.8
1,892,276	-		PP_1697	0.71	+0.0
1,892,276	-		PP_1697	0.71	-0.1
1,892,569	+				+2.1
1,892,569	+				+1.4
1,892,569	+				+2.5
1,892,570	-				+0.4
1,892,570	-				-0.1
1,892,577	+				+1.0
1,892,577	+				+0.9