Strain Fitness in Pseudomonas putida KT2440 around PP_1675

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,869,012	+		PP_1673	0.87	+0.7
1,869,012	+		PP_1673	0.87	+1.0
1,869,012	+		PP_1673	0.87	+0.2
1,869,013	-		PP_1673	0.87	-1.5
1,869,013	-		PP_1673	0.87	-0.5
1,869,124	-				+0.0
1,869,124	-				+0.9
1,869,135	+				+0.5
1,869,136	-				-1.0
1,869,136	-				-1.0
1,869,136	-				+0.5
1,869,194	+				+1.8
1,869,334	+		PP_1674	0.24	+1.2
1,869,335	-		PP_1674	0.24	+0.7
1,869,335	-		PP_1674	0.24	+0.9
1,869,335	-		PP_1674	0.24	+1.3
1,869,335	-		PP_1674	0.24	-1.8
1,869,352	+		PP_1674	0.27	-0.1
1,869,359	-		PP_1674	0.28	-1.5
1,869,477	+		PP_1674	0.46	-0.9
1,869,478	-		PP_1674	0.46	+1.0
1,869,709	-		PP_1674	0.81	+1.1
1,869,737	+		PP_1674	0.86	-0.6
1,869,738	-		PP_1674	0.86	+0.4
1,869,918	+		PP_1675	0.12	-0.4
1,869,919	-		PP_1675	0.12	+0.1
1,870,046	-		PP_1675	0.25	-2.7
1,870,357	+		PP_1675	0.59	+0.2
1,870,420	+		PP_1675	0.66	+0.0
1,870,420	+		PP_1675	0.66	-0.1
1,870,420	+		PP_1675	0.66	-1.0
1,870,420	+		PP_1675	0.66	-0.6
1,870,420	+		PP_1675	0.66	-0.4
1,870,420	+		PP_1675	0.66	-2.1
1,870,420	+		PP_1675	0.66	-0.2
1,870,420	+		PP_1675	0.66	-0.5
1,870,421	-		PP_1675	0.66	-0.3
1,870,421	-		PP_1675	0.66	+1.5
1,870,421	-		PP_1675	0.66	-1.2
1,870,422	+		PP_1675	0.66	+0.9
1,870,422	+		PP_1675	0.66	+0.2
1,870,423	-		PP_1675	0.66	-1.2
1,870,423	-		PP_1675	0.66	-0.5
1,870,423	-		PP_1675	0.66	-1.5
1,870,424	+		PP_1675	0.66	-0.5
1,870,424	+		PP_1675	0.66	+0.5
1,870,425	-		PP_1675	0.66	-1.2
1,870,425	-		PP_1675	0.66	-0.5
1,870,425	-		PP_1675	0.66	-1.1
1,870,425	-		PP_1675	0.66	-2.2
1,870,450	+		PP_1675	0.69	-0.2
1,870,450	+		PP_1675	0.69	-0.8
1,870,451	-		PP_1675	0.69	-1.4
1,870,451	-		PP_1675	0.69	+1.3
1,870,451	-		PP_1675	0.69	+0.3
1,870,588	+		PP_1675	0.84	-2.1
1,870,589	-		PP_1675	0.84	-1.1
1,870,589	-		PP_1675	0.84	+0.9
1,870,720	+				-0.5
1,870,720	+				-1.1
1,870,720	+				-0.7
1,870,720	+				-0.6
1,870,720	+				-0.0
1,870,721	-				+0.8
1,870,721	-				-0.1
1,870,721	-				-0.9
1,870,721	-				-0.8
1,870,722	+				-0.1
1,870,769	+				+2.3
1,870,770	-				-0.9
1,870,907	+		PP_1676	0.18	-3.1
1,870,908	-		PP_1676	0.18	-0.2
1,870,910	+		PP_1676	0.18	-0.7
1,870,911	-		PP_1676	0.19	+0.7
1,870,978	+		PP_1676	0.25	+1.0
1,870,978	+		PP_1676	0.25	+0.8
1,870,979	-		PP_1676	0.25	+0.5
1,870,979	-		PP_1676	0.25	+0.1
1,870,979	-		PP_1676	0.25	-0.8
1,871,013	-		PP_1676	0.29	+0.5
1,871,027	+		PP_1676	0.30	-1.2
1,871,028	-		PP_1676	0.30	+0.3
1,871,525	-		PP_1676	0.80	+0.5
1,871,550	-		PP_1676	0.83	-0.7
1,871,550	-		PP_1676	0.83	-0.1
1,871,558	-		PP_1676	0.84	+0.5