Strain Fitness in Pseudomonas putida KT2440 around PP_1663

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,858,868	+				-0.8
1,859,078	+				+0.1
1,859,078	+				+0.8
1,859,078	+				+1.7
1,859,078	+				+0.2
1,859,079	-				+1.4
1,859,079	-				-1.4
1,859,250	-		PP_1662	0.30	-1.4
1,859,281	+		PP_1662	0.44	-1.7
1,859,281	+		PP_1662	0.44	-0.9
1,859,282	-		PP_1662	0.44	-0.2
1,859,282	-		PP_1662	0.44	-1.0
1,859,349	+		PP_1662	0.74	-0.7
1,859,418	-				-1.2
1,859,419	+				-0.6
1,859,441	+				-1.1
1,859,546	-				-0.2
1,859,546	-				-1.1
1,859,619	+				-2.5
1,859,619	+				-1.1
1,859,619	+				-3.3
1,859,620	-				-1.2
1,859,620	-				-1.7
1,859,664	+		PP_1663	0.14	-2.2
1,859,665	-		PP_1663	0.14	-1.3
1,859,665	-		PP_1663	0.14	-2.7
1,859,799	+		PP_1663	0.33	-2.9
1,859,800	-		PP_1663	0.33	-0.9
1,859,832	+		PP_1663	0.38	-1.5
1,859,832	+		PP_1663	0.38	-1.9
1,859,833	-		PP_1663	0.38	-3.2
1,859,833	-		PP_1663	0.38	-2.0
1,859,833	-		PP_1663	0.38	-3.2
1,859,833	-		PP_1663	0.38	-2.0
1,859,833	-		PP_1663	0.38	-1.3
1,859,883	+		PP_1663	0.45	+0.3
1,860,024	+		PP_1663	0.65	-2.2
1,860,024	+		PP_1663	0.65	-0.7
1,860,025	-		PP_1663	0.65	-1.3
1,860,110	-		PP_1663	0.77	-0.6
1,860,110	-		PP_1663	0.77	-2.4
1,860,110	-		PP_1663	0.77	-2.1
1,860,193	-		PP_1663	0.88	-1.9
1,860,274	+				-0.9
1,860,285	-				-1.0
1,860,331	+				-2.1
1,860,331	+				-1.3
1,860,332	-				+0.0
1,860,393	-		PP_1664	0.17	+0.0
1,860,416	-		PP_1664	0.20	-1.3
1,860,515	-		PP_1664	0.35	-2.3
1,860,515	-		PP_1664	0.35	-1.1
1,860,515	-		PP_1664	0.35	-2.6
1,860,564	+		PP_1664	0.43	-1.1
1,860,564	+		PP_1664	0.43	-1.4
1,860,565	-		PP_1664	0.43	+0.5
1,860,578	+		PP_1664	0.45	+0.0
1,860,578	+		PP_1664	0.45	-1.4
1,860,579	-		PP_1664	0.45	+0.2
1,860,579	-		PP_1664	0.45	+1.3
1,860,579	-		PP_1664	0.45	-1.4
1,860,907	+				-1.3
1,860,907	+				-1.8
1,860,913	+				-0.8
1,860,913	+				-2.2
1,860,913	+				-0.8
1,860,913	+				-2.0
1,860,913	+				+0.0
1,860,913	+				-2.2
1,860,913	+				+2.0
1,860,914	-				-1.5
1,860,914	-				+0.0
1,860,914	-				-0.5