Strain Fitness in Pseudomonas putida KT2440 around PP_1662

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,858,255	+		PP_1661	0.63	+1.2
1,858,328	+		PP_1661	0.67	-0.5
1,858,329	-		PP_1661	0.67	-1.4
1,858,329	-		PP_1661	0.67	+0.1
1,858,344	-		PP_1661	0.67	+1.5
1,858,381	+		PP_1661	0.69	-0.8
1,858,381	+		PP_1661	0.69	-0.6
1,858,385	+		PP_1661	0.69	+0.4
1,858,385	+		PP_1661	0.69	-1.1
1,858,385	+		PP_1661	0.69	+0.6
1,858,386	-		PP_1661	0.69	+1.3
1,858,386	-		PP_1661	0.69	+0.6
1,858,436	-		PP_1661	0.71	-0.7
1,858,484	+		PP_1661	0.74	+0.3
1,858,521	-		PP_1661	0.75	-0.3
1,858,868	+				-0.8
1,859,078	+				+0.1
1,859,078	+				+0.8
1,859,078	+				+1.7
1,859,078	+				+0.2
1,859,079	-				+1.4
1,859,079	-				-1.4
1,859,250	-		PP_1662	0.30	-1.4
1,859,281	+		PP_1662	0.44	-1.7
1,859,281	+		PP_1662	0.44	-0.9
1,859,282	-		PP_1662	0.44	-0.2
1,859,282	-		PP_1662	0.44	-1.0
1,859,349	+		PP_1662	0.74	-0.7
1,859,418	-				-1.2
1,859,419	+				-0.6
1,859,441	+				-1.1
1,859,546	-				-0.2
1,859,546	-				-1.1
1,859,619	+				-2.5
1,859,619	+				-1.1
1,859,619	+				-3.3
1,859,620	-				-1.2
1,859,620	-				-1.7
1,859,664	+		PP_1663	0.14	-2.2
1,859,665	-		PP_1663	0.14	-1.3
1,859,665	-		PP_1663	0.14	-2.7
1,859,799	+		PP_1663	0.33	-2.9
1,859,800	-		PP_1663	0.33	-0.9
1,859,832	+		PP_1663	0.38	-1.5
1,859,832	+		PP_1663	0.38	-1.9
1,859,833	-		PP_1663	0.38	-3.2
1,859,833	-		PP_1663	0.38	-2.0
1,859,833	-		PP_1663	0.38	-3.2
1,859,833	-		PP_1663	0.38	-2.0
1,859,833	-		PP_1663	0.38	-1.3
1,859,883	+		PP_1663	0.45	+0.3
1,860,024	+		PP_1663	0.65	-2.2
1,860,024	+		PP_1663	0.65	-0.7
1,860,025	-		PP_1663	0.65	-1.3
1,860,110	-		PP_1663	0.77	-0.6
1,860,110	-		PP_1663	0.77	-2.4
1,860,110	-		PP_1663	0.77	-2.1
1,860,193	-		PP_1663	0.88	-1.9
1,860,274	+				-0.9
1,860,285	-				-1.0
1,860,331	+				-2.1
1,860,331	+				-1.3
1,860,332	-				+0.0
1,860,393	-		PP_1664	0.17	+0.0