Strain Fitness in Pseudomonas putida KT2440 around PP_1610

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,806,086	+				-0.8
1,806,128	+		PP_1609	0.23	+0.9
1,806,188	+		PP_1609	0.65	-1.2
1,806,199	+		PP_1609	0.73	-0.9
1,808,070	+		PP_1611	0.14	+1.0
1,808,070	+		PP_1611	0.14	-1.4
1,808,071	-		PP_1611	0.14	-0.1
1,808,071	-		PP_1611	0.14	-0.4
1,808,071	-		PP_1611	0.14	+0.4
1,808,071	-		PP_1611	0.14	+0.8
1,808,104	-		PP_1611	0.18	+1.4
1,808,154	+		PP_1611	0.24	-1.3
1,808,155	-		PP_1611	0.24	-0.3
1,808,155	-		PP_1611	0.24	+1.3
1,808,273	-		PP_1611	0.38	-0.2
1,808,273	-		PP_1611	0.38	+0.0
1,808,273	-		PP_1611	0.38	+0.5
1,808,440	+		PP_1611	0.58	+0.6
1,808,441	-		PP_1611	0.58	+1.1
1,808,441	-		PP_1611	0.58	+1.2
1,808,469	+		PP_1611	0.61	-0.4
1,808,717	+				+0.2
1,808,718	-				+0.3
1,808,782	+				-0.4
1,808,793	+				-1.0
1,808,908	+				-0.4
1,808,908	+				-0.3
1,808,913	+				-0.2
1,808,913	+				+0.5
1,808,913	+				-0.4