Strain Fitness in Pseudomonas putida KT2440 around PP_1607

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1606 and PP_1607 are separated by 106 nucleotidesPP_1607 and PP_1608 are separated by 171 nucleotides PP_1606: PP_1606 - DNA polymerase III, alpha subunit, at 1,800,017 to 1,803,541 _1606 PP_1607: PP_1607 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 1,803,648 to 1,804,595 _1607 PP_1608: PP_1608 - tRNA(Ile)-lysidine synthase, at 1,804,767 to 1,806,050 _1608 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -2 -1 0 1at 1803.555 kb on + strandat 1803.584 kb on + strandat 1803.589 kb on + strandat 1803.628 kb on + strandat 1804.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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1,803,555 + +0.1
1,803,584 + -2.2
1,803,589 + +1.1
1,803,628 + -2.0
1,804,712 + +1.1

Or see this region's nucleotide sequence