Strain Fitness in Pseudomonas putida KT2440 around PP_1587

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,777,348	-				-0.2
1,777,417	+				-1.4
1,777,426	+				+1.6
1,777,427	-				+0.5
1,777,438	+				-0.7
1,777,438	+				+0.4
1,777,439	-				+0.1
1,777,496	-				+0.0
1,777,541	+				+0.6
1,777,542	-				-1.6
1,777,542	-				-0.8
1,777,751	-		PP_1585	0.64	+0.4
1,777,751	-		PP_1585	0.64	-1.4
1,777,843	-				-1.2
1,777,843	-				-1.4
1,777,843	-				+1.5
1,777,893	-				+0.2
1,777,893	-				-0.4
1,777,949	+		PP_1586	0.30	-0.1
1,777,950	-		PP_1586	0.30	-0.5
1,778,009	+		PP_1586	0.51	+2.0
1,778,009	+		PP_1586	0.51	+0.8
1,778,009	+		PP_1586	0.51	-0.0
1,778,009	+		PP_1586	0.51	+1.6
1,778,009	+		PP_1586	0.51	+2.3
1,778,010	-		PP_1586	0.52	-1.2
1,778,010	-		PP_1586	0.52	+0.2
1,778,010	-		PP_1586	0.52	-1.5
1,778,072	+		PP_1586	0.74	+1.4
1,778,073	-		PP_1586	0.74	-1.4
1,778,073	-		PP_1586	0.74	-1.3
1,778,073	-		PP_1586	0.74	-1.5
1,778,129	+				+0.5
1,778,129	+				+0.1
1,778,129	+				+0.7
1,778,129	+				+0.3
1,778,181	-				-1.3
1,778,182	+				-1.7
1,778,183	-				-0.9
1,778,198	+				-0.5
1,778,198	+				-0.1
1,778,199	-				-2.2
1,778,214	+				-1.5
1,778,267	+				-2.7
1,778,267	+				-2.7
1,778,267	+				-0.8
1,778,271	+				-2.2
1,778,271	+				+0.7
1,778,272	-				-0.0
1,778,272	-				-0.5
1,778,272	-				-1.5
1,778,272	-				-0.0
1,778,272	-				-1.5
1,778,272	-				-2.7
1,778,292	+				-2.0
1,778,292	+				-1.6
1,778,326	+				-2.7
1,778,327	-				-0.6
1,778,331	+				-0.1
1,778,331	+				+0.8
1,778,331	+				-1.2
1,778,331	+				+0.1
1,778,331	+				+0.0
1,778,332	-				-1.2
1,778,332	-				-1.2
1,778,332	-				-1.0
1,778,332	-				+0.1
1,778,332	-				-0.7
1,778,361	+				-2.8
1,778,407	+				-2.2
1,778,486	+				-2.5
1,778,537	+		PP_1587	0.12	-0.0
1,778,538	-		PP_1587	0.12	+0.3
1,778,567	+		PP_1587	0.13	-1.9
1,778,622	-		PP_1587	0.17	+1.0
1,778,622	-		PP_1587	0.17	-3.6
1,778,622	-		PP_1587	0.17	-4.0
1,778,692	+		PP_1587	0.21	-1.9
1,778,693	-		PP_1587	0.21	-4.0
1,778,976	-		PP_1587	0.37	-1.7
1,779,080	-		PP_1587	0.43	-2.6
1,779,360	+		PP_1587	0.60	-2.2
1,779,360	+		PP_1587	0.60	-1.6
1,779,360	+		PP_1587	0.60	-3.6
1,779,360	+		PP_1587	0.60	-3.0
1,779,361	-		PP_1587	0.60	-1.7
1,779,361	-		PP_1587	0.60	-0.4
1,779,387	+		PP_1587	0.61	-1.6
1,779,388	-		PP_1587	0.62	-1.2
1,779,451	-		PP_1587	0.65	-1.9
1,779,537	-		PP_1587	0.70	-2.7
1,779,574	-		PP_1587	0.72	-3.9
1,779,594	-		PP_1587	0.74	-1.1
1,779,635	+		PP_1587	0.76	-2.4
1,779,636	-		PP_1587	0.76	-1.3
1,779,638	+		PP_1587	0.76	-2.2
1,779,943	+				-1.5
1,779,943	+				-1.8
1,780,008	+				-3.0
1,780,009	-				-2.1
1,780,009	-				+0.9
1,780,039	+				+0.5
1,780,040	-				+0.3
1,780,046	+				-0.3
1,780,046	+				-3.4
1,780,047	-				-1.0
1,780,047	-				-0.6
1,780,047	-				-1.5
1,780,111	+				+0.5
1,780,112	-				-0.4
1,780,112	-				-2.5
1,780,271	+		PP_1588	0.10	+0.1
1,780,291	+		PP_1588	0.12	+0.1
1,780,291	+		PP_1588	0.12	-1.4
1,780,292	-		PP_1588	0.12	+0.1
1,780,292	-		PP_1588	0.12	+0.1
1,780,292	-		PP_1588	0.12	+0.0
1,780,358	+		PP_1588	0.18	-0.7
1,780,358	+		PP_1588	0.18	+0.1
1,780,359	-		PP_1588	0.18	-2.3
1,780,422	-		PP_1588	0.23	-0.8
1,780,454	-		PP_1588	0.26	+1.4
1,780,454	-		PP_1588	0.26	+1.5
1,780,523	+		PP_1588	0.31	+1.8
1,780,523	+		PP_1588	0.31	+0.5
1,780,706	+		PP_1588	0.47	-0.2
1,780,706	+		PP_1588	0.47	+0.8
1,780,706	+		PP_1588	0.47	-0.4
1,780,707	-		PP_1588	0.47	+0.4
1,780,807	-		PP_1588	0.55	-0.2
1,780,913	+		PP_1588	0.64	+1.5
1,780,914	-		PP_1588	0.64	+0.7
1,780,914	-		PP_1588	0.64	+1.0
1,780,952	+		PP_1588	0.67	+0.3
1,780,953	-		PP_1588	0.67	+2.0
1,780,953	-		PP_1588	0.67	-2.3
1,780,961	+		PP_1588	0.68	-0.1
1,780,962	-		PP_1588	0.68	-0.4