Strain Fitness in Pseudomonas putida KT2440 around PP_1557

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,753,899	-		PP_1555	0.68	-0.6
1,754,008	-		PP_1555	0.77	+0.1
1,754,056	-		PP_1555	0.81	-0.4
1,754,106	-		PP_1555	0.85	+0.9
1,754,106	-		PP_1555	0.85	+2.0
1,754,295	-				+1.1
1,754,420	-		PP_1556	0.38	+0.4
1,754,420	-		PP_1556	0.38	+0.6
1,754,488	-		PP_1556	0.59	+0.5
1,754,488	-		PP_1556	0.59	+1.2
1,754,669	-		PP_1557	0.23	-1.1
1,754,669	-		PP_1557	0.23	+0.6
1,754,669	-		PP_1557	0.23	-0.1
1,754,753	-		PP_1557	0.47	-0.6
1,754,876	+		PP_1557	0.83	-2.9
1,754,877	-		PP_1557	0.83	+0.8
1,754,877	-		PP_1557	0.83	-1.8
1,754,877	-		PP_1557	0.83	+1.0
1,754,877	-		PP_1557	0.83	+0.5
1,754,877	-		PP_1557	0.83	-2.2
1,754,877	-		PP_1557	0.83	-0.9
1,754,880	+		PP_1557	0.84	-0.8
1,754,880	+		PP_1557	0.84	-0.3
1,754,880	+		PP_1557	0.84	+1.1
1,754,881	-		PP_1557	0.85	-2.7
1,754,881	-		PP_1557	0.85	-0.2
1,754,881	-		PP_1557	0.85	-1.3
1,754,881	-		PP_1557	0.85	-2.3
1,754,881	-		PP_1557	0.85	-0.7
1,754,932	-				+0.6
1,754,955	-				-0.3
1,754,971	+				+0.2
1,754,971	+				+2.9
1,754,971	+				+0.2
1,754,972	-				+1.3
1,755,098	+		PP_1558	0.45	-1.6
1,755,099	-		PP_1558	0.45	+0.8
1,755,118	+		PP_1558	0.51	-0.3
1,755,148	+		PP_1558	0.60	-1.0
1,755,148	+		PP_1558	0.60	-1.4
1,755,148	+		PP_1558	0.60	-1.9
1,755,149	-		PP_1558	0.60	+0.2
1,755,151	+		PP_1558	0.61	+1.4
1,755,152	-		PP_1558	0.61	-0.7
1,755,152	-		PP_1558	0.61	-0.0
1,755,152	-		PP_1558	0.61	+1.3
1,755,152	-		PP_1558	0.61	+1.4
1,755,152	-		PP_1558	0.61	+0.0
1,755,152	-		PP_1558	0.61	+0.1
1,755,152	-		PP_1558	0.61	+0.6
1,755,152	-		PP_1558	0.61	+0.3
1,755,264	+				+1.1
1,755,265	-				-0.3
1,755,265	-				+0.1
1,755,265	-				-1.1
1,755,305	+				+1.2
1,755,317	+				-0.4
1,755,368	+				-0.2
1,755,369	-				-0.7
1,755,563	+		PP_1559	0.24	-1.5
1,755,563	+		PP_1559	0.24	+1.4
1,755,563	+		PP_1559	0.24	-1.9
1,755,564	-		PP_1559	0.24	+0.1
1,755,608	+		PP_1559	0.38	+0.2
1,755,608	+		PP_1559	0.38	+0.5
1,755,609	-		PP_1559	0.38	+1.1
1,755,609	-		PP_1559	0.38	+2.9
1,755,664	+		PP_1559	0.55	-0.6
1,755,793	+				+1.1
1,755,793	+				-0.9
1,755,794	-				+0.3