Strain Fitness in Pseudomonas putida KT2440 around PP_1407

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,603,569	+		PP_1406	0.17	-0.7
1,603,570	-		PP_1406	0.17	+0.6
1,603,570	-		PP_1406	0.17	-0.1
1,603,570	-		PP_1406	0.17	+0.5
1,603,570	-		PP_1406	0.17	-0.7
1,603,570	-		PP_1406	0.17	-0.4
1,603,648	-		PP_1406	0.24	-0.4
1,603,693	+		PP_1406	0.29	+0.8
1,603,912	+		PP_1406	0.51	+0.9
1,603,985	-		PP_1406	0.58	-0.4
1,603,997	-		PP_1406	0.59	-0.2
1,604,113	+		PP_1406	0.70	-0.6
1,604,113	+		PP_1406	0.70	+1.3
1,604,113	+		PP_1406	0.70	-0.5
1,604,113	+		PP_1406	0.70	+0.8
1,604,114	-		PP_1406	0.71	-0.9
1,604,116	+		PP_1406	0.71	+0.5
1,604,116	+		PP_1406	0.71	+0.6
1,604,297	-		PP_1406	0.89	+0.9
1,604,297	-		PP_1406	0.89	-2.5
1,604,313	+				-0.4
1,604,314	-				+0.4
1,604,450	+				+0.4
1,604,450	+				-0.3
1,604,450	+				+1.0
1,604,451	-				+0.7
1,604,451	-				+0.1
1,604,451	-				+1.3
1,604,451	-				-0.1
1,604,617	-				+0.2
1,604,629	-				-1.6
1,604,802	+		PP_1407	0.15	-0.6
1,604,802	+		PP_1407	0.15	-2.3
1,604,814	-		PP_1407	0.16	-0.4
1,604,841	+		PP_1407	0.17	-0.5
1,604,842	-		PP_1407	0.17	-0.3
1,604,899	+		PP_1407	0.21	-2.4
1,604,916	+		PP_1407	0.22	-0.4
1,604,916	+		PP_1407	0.22	-0.9
1,605,001	+		PP_1407	0.27	-0.1
1,605,001	+		PP_1407	0.27	+0.6
1,605,001	+		PP_1407	0.27	-1.2
1,605,002	-		PP_1407	0.27	+0.1
1,605,002	-		PP_1407	0.27	-0.7
1,605,002	-		PP_1407	0.27	+1.1
1,605,010	+		PP_1407	0.27	+0.4
1,605,076	-		PP_1407	0.31	-1.5
1,605,076	-		PP_1407	0.31	+0.6
1,605,271	-		PP_1407	0.43	+0.8
1,605,271	-		PP_1407	0.43	+0.1
1,605,409	+		PP_1407	0.51	-0.5
1,605,409	+		PP_1407	0.51	+0.8
1,605,440	+		PP_1407	0.52	-1.2
1,605,441	-		PP_1407	0.53	+0.1
1,605,552	+		PP_1407	0.59	-1.0
1,605,624	+		PP_1407	0.63	-0.5
1,606,047	-		PP_1407	0.88	-0.7
1,606,060	+		PP_1407	0.89	-0.7
1,606,075	-		PP_1407	0.90	+0.5
1,606,087	+				+0.5
1,606,087	+				-0.8
1,606,088	-				-0.2
1,606,097	-				-0.2
1,606,097	-				+0.8
1,606,097	-				-0.5
1,606,126	+				-0.5
1,606,267	+				-1.7
1,606,291	-				-1.7
1,606,291	-				-2.2
1,606,356	+				-1.0
1,606,357	-				-1.1
1,606,492	+		PP_t64	0.42	-0.0
1,606,493	-		PP_t64	0.43	-0.0
1,606,526	+		PP_t64	0.88	+0.3
1,606,526	+				-1.7
1,606,526	+		PP_t64	0.88	-0.5
1,606,527	-				+0.1
1,606,527	-				-2.1
1,606,528	+				+0.6
1,606,529	-				+0.6
1,606,585	+				-0.1
1,606,588	-				+0.3
1,606,628	+				+0.5
1,606,629	-				+1.0
1,606,687	-				-1.7
1,606,861	-		PP_1408	0.24	+1.6
1,606,903	+		PP_1408	0.29	-1.6
1,606,977	+		PP_1408	0.37	-0.7
1,607,010	+		PP_1408	0.41	+0.5
1,607,011	-				-1.8
1,607,011	-		PP_1408	0.41	+0.0
1,607,011	-		PP_1408	0.41	+1.2
1,607,100	+		PP_1408	0.51	-0.7
1,607,100	+		PP_1408	0.51	-1.5
1,607,100	+		PP_1408	0.51	+0.3
1,607,100	+		PP_1408	0.51	-0.8
1,607,122	-		PP_1408	0.54	+0.9
1,607,181	+		PP_1408	0.60	-1.6