Strain Fitness in Pseudomonas putida KT2440 around PP_1251

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,427,588	+				+0.3
1,427,677	+				-0.6
1,427,932	-				+0.5
1,427,932	-				-2.4
1,428,108	-		PP_1251	0.13	+0.3
1,428,108	-		PP_1251	0.13	-0.6
1,428,108	-		PP_1251	0.13	+1.4
1,428,108	-		PP_1251	0.13	+1.4
1,428,204	+		PP_1251	0.19	+1.4
1,428,348	-		PP_1251	0.28	-0.6
1,428,348	-		PP_1251	0.28	+0.3
1,428,578	+		PP_1251	0.43	+1.1
1,428,579	-		PP_1251	0.43	-1.4
1,428,696	-		PP_1251	0.50	+1.8
1,428,773	+		PP_1251	0.55	+0.5
1,428,773	+		PP_1251	0.55	+0.6
1,428,905	+		PP_1251	0.63	+0.4
1,428,975	-		PP_1251	0.68	+0.9
1,428,989	+		PP_1251	0.69	+0.3
1,429,047	-		PP_1251	0.72	+0.0
1,429,047	-		PP_1251	0.72	-0.7
1,429,047	-		PP_1251	0.72	+0.4
1,429,367	+				-0.6
1,429,367	+				-1.7
1,429,367	+				-1.7
1,429,368	-				-1.0
1,429,368	-				-1.2
1,429,394	-				-0.1
1,429,482	-				+1.7
1,429,482	-				+0.7
1,429,482	-				+0.1