Strain Fitness in Pseudomonas putida KT2440 around PP_1213

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,389,242	+				+0.2
1,389,243	-				-1.5
1,389,243	-				-0.4
1,389,395	+				-2.2
1,389,396	-				-2.3
1,389,476	-				+0.0
1,389,589	+		PP_1211	0.42	-1.2
1,389,590	-		PP_1211	0.42	-0.1
1,389,628	-		PP_1211	0.54	-0.6
1,389,628	-		PP_1211	0.54	-0.5
1,389,677	+		PP_1211	0.68	-1.6
1,389,677	+		PP_1211	0.68	-0.2
1,389,678	-		PP_1211	0.68	-0.0
1,389,678	-		PP_1211	0.68	-1.7
1,389,818	+				-0.4
1,389,820	+				-0.8
1,389,820	+				+1.3
1,389,820	+				+0.2
1,389,820	+				-0.0
1,389,820	+				+0.7
1,389,820	+				-1.7
1,389,820	+				+0.4
1,389,820	+				+1.6
1,389,820	+				-0.3
1,389,822	+				+0.1
1,389,822	+				-0.2
1,389,822	+				-1.7
1,389,822	+				-1.3
1,389,822	+				+0.7
1,389,858	+				+0.7
1,389,858	+				+0.4
1,389,858	+				+0.8
1,389,888	+				-1.1
1,389,888	+				-0.7
1,389,894	+				-1.5
1,390,128	+				+0.9
1,390,128	+				-1.3
1,390,128	+				-1.2
1,392,624	+				+0.0
1,392,624	+		PP_1214	0.72	+0.7
1,392,624	+		PP_1214	0.72	+2.0
1,392,624	+		PP_1214	0.72	+0.2
1,392,625	-		PP_1214	0.72	-2.5
1,392,625	-		PP_1214	0.72	-0.6
1,392,625	-		PP_1214	0.72	-0.9
1,392,636	-				+1.0
1,392,636	-				-1.1
1,392,783	+				+1.1
1,392,784	-				-3.0
1,392,908	-				-1.7
1,392,913	+				-3.1
1,392,913	+				-0.0
1,392,914	-				-0.0
1,392,914	-				-1.5
1,392,916	+				-1.7
1,392,917	-				-2.2
1,392,941	+				+0.0
1,392,947	+				-0.8
1,392,948	-				-1.8
1,392,948	-				-1.2
1,392,959	+				-0.0
1,392,960	-				-1.2