Strain Fitness in Pseudomonas putida KT2440 around PP_1201

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,375,381	-		PP_1200	0.52	-0.8
1,375,381	-		PP_1200	0.52	+1.7
1,375,382	+		PP_1200	0.52	+0.2
1,375,434	+		PP_1200	0.55	-0.8
1,375,434	+		PP_1200	0.55	-0.1
1,375,434	+		PP_1200	0.55	-1.0
1,375,434	+		PP_1200	0.55	-1.5
1,375,434	+		PP_1200	0.55	-0.4
1,375,435	-		PP_1200	0.55	-0.4
1,375,435	-		PP_1200	0.55	-0.1
1,375,435	-		PP_1200	0.55	+1.0
1,375,723	-		PP_1200	0.70	-1.0
1,375,898	-		PP_1200	0.79	-0.2
1,376,007	+		PP_1200	0.85	-0.1
1,376,008	-		PP_1200	0.85	-0.5
1,376,127	+				-0.4
1,376,128	-				-1.1
1,376,269	+				+0.1
1,376,269	+				-1.2
1,376,270	-				-3.6
1,376,270	-				-0.1
1,376,299	+				-1.2
1,376,299	+				-1.3
1,376,299	+				+0.0
1,376,301	+				+1.7
1,376,301	+				+0.5
1,376,301	+				-0.1
1,376,302	-				+0.6
1,376,302	-				+0.4
1,376,302	-				+1.6
1,376,356	-				+0.0
1,376,356	-				+0.6
1,376,417	-				-1.3
1,376,463	+				-3.2
1,376,463	+				-4.3
1,376,512	+		PP_1201	0.13	-2.1
1,376,512	+		PP_1201	0.13	-2.1
1,376,513	-		PP_1201	0.13	-3.0
1,376,514	+		PP_1201	0.13	-3.4
1,376,515	-		PP_1201	0.14	-2.4
1,376,515	-		PP_1201	0.14	-3.6
1,376,515	-		PP_1201	0.14	-3.3
1,376,515	-		PP_1201	0.14	-2.5
1,376,687	-		PP_1201	0.27	-3.7
1,376,719	+		PP_1201	0.29	-2.1
1,376,821	+		PP_1201	0.37	-3.6
1,376,824	+		PP_1201	0.37	-1.6
1,376,825	-		PP_1201	0.38	-3.8
1,376,825	-		PP_1201	0.38	-4.2
1,376,931	-		PP_1201	0.46	-3.5
1,377,053	-		PP_1201	0.55	-2.2
1,377,610	+				-4.5
1,377,726	+				-5.3
1,377,786	+				-2.9
1,377,873	-				-2.7
1,377,898	-		PP_1202	0.10	-2.5
1,377,912	+		PP_1202	0.11	-5.0
1,377,913	-		PP_1202	0.11	-3.0
1,378,064	+		PP_1202	0.16	-3.4
1,378,064	+		PP_1202	0.16	-4.3
1,378,084	-		PP_1202	0.17	-2.1
1,378,240	-		PP_1202	0.23	-0.4
1,378,345	-		PP_1202	0.27	-2.9
1,378,374	+		PP_1202	0.28	-3.3
1,378,375	-		PP_1202	0.28	+0.4
1,378,464	+		PP_1202	0.31	-4.0
1,378,464	+		PP_1202	0.31	-3.1
1,378,464	+		PP_1202	0.31	-1.9
1,378,465	-		PP_1202	0.32	-3.3
1,378,465	-				+0.4
1,378,465	-		PP_1202	0.32	-3.1
1,378,465	-		PP_1202	0.32	-3.6
1,378,497	+		PP_1202	0.33	-3.1
1,378,498	-		PP_1202	0.33	-2.0
1,378,498	-		PP_1202	0.33	-4.3