Strain Fitness in Pseudomonas putida KT2440 around PP_1200

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,373,434	-		PP_1198	0.35	-0.6
1,373,434	-		PP_1198	0.35	-4.1
1,373,443	-		PP_1198	0.38	+0.1
1,373,456	+		PP_1198	0.42	+0.6
1,373,457	-		PP_1198	0.42	-0.0
1,373,457	-		PP_1198	0.42	-0.6
1,373,637	-				+1.0
1,373,637	-				+0.4
1,373,695	-		PP_1199	0.23	+0.8
1,373,695	-		PP_1199	0.23	-0.3
1,373,736	+		PP_1199	0.35	+0.8
1,373,737	-		PP_1199	0.35	-0.7
1,373,739	+		PP_1199	0.36	-1.3
1,373,739	+		PP_1199	0.36	+0.7
1,373,740	-		PP_1199	0.36	+0.8
1,373,740	-				-0.3
1,373,751	-				-0.1
1,373,751	-		PP_1199	0.40	+0.6
1,373,751	-		PP_1199	0.40	+0.2
1,373,751	-		PP_1199	0.40	+1.2
1,373,850	+		PP_1199	0.69	+0.8
1,373,909	+		PP_1199	0.87	+0.5
1,373,909	+		PP_1199	0.87	+1.7
1,373,909	+		PP_1199	0.87	-1.0
1,373,971	-				+0.7
1,373,983	+				-1.3
1,373,983	+				-1.6
1,373,983	+				-0.2
1,373,984	-				+0.7
1,373,984	-				+0.5
1,373,984	-				-0.8
1,373,984	-				-1.9
1,373,984	-				-0.4
1,373,984	-				+1.0
1,373,991	-				-0.5
1,373,991	-				+0.0
1,374,044	+				-3.4
1,374,044	+				-2.0
1,374,046	+				-0.9
1,374,047	-				-0.9
1,374,047	-				-0.3
1,374,047	-				-1.1
1,374,068	+				-2.6
1,374,069	-				+0.7
1,374,117	-				-0.1
1,374,117	-				+0.0
1,374,290	+				-1.8
1,374,290	+				-3.7
1,374,345	-				+0.2
1,374,504	+				-0.9
1,374,504	+				-0.2
1,374,504	+				+0.6
1,374,504	+				-1.0
1,374,505	-				+0.0
1,374,505	-				-1.9
1,374,505	-				-2.3
1,374,505	-				+0.1
1,374,618	+		PP_1200	0.12	-1.2
1,374,619	-		PP_1200	0.12	-1.5
1,374,762	+		PP_1200	0.20	-1.7
1,374,762	+		PP_1200	0.20	-2.3
1,374,762	+		PP_1200	0.20	-1.7
1,374,763	-		PP_1200	0.20	-0.1
1,374,773	+		PP_1200	0.21	-0.0
1,374,773	+		PP_1200	0.21	-1.1
1,374,773	+		PP_1200	0.21	-1.2
1,374,773	+		PP_1200	0.21	+0.7
1,374,774	-		PP_1200	0.21	-1.4
1,374,774	-		PP_1200	0.21	-0.2
1,374,892	+		PP_1200	0.27	+0.3
1,374,935	+		PP_1200	0.29	-1.4
1,374,935	+		PP_1200	0.29	-0.8
1,374,936	-		PP_1200	0.29	+0.9
1,374,936	-		PP_1200	0.29	-0.5
1,375,003	+		PP_1200	0.33	-0.1
1,375,003	+		PP_1200	0.33	-0.4
1,375,116	+		PP_1200	0.38	-0.4
1,375,117	-		PP_1200	0.39	-1.4
1,375,197	+		PP_1200	0.43	+0.7
1,375,197	+		PP_1200	0.43	-1.7
1,375,197	+		PP_1200	0.43	-2.9
1,375,198	-		PP_1200	0.43	+0.6
1,375,254	+		PP_1200	0.46	-0.1
1,375,255	-		PP_1200	0.46	-1.2
1,375,381	-		PP_1200	0.52	-0.8
1,375,381	-		PP_1200	0.52	+1.7
1,375,382	+		PP_1200	0.52	+0.2
1,375,434	+		PP_1200	0.55	-0.8
1,375,434	+		PP_1200	0.55	-0.1
1,375,434	+		PP_1200	0.55	-1.0
1,375,434	+		PP_1200	0.55	-1.5
1,375,434	+		PP_1200	0.55	-0.4
1,375,435	-		PP_1200	0.55	-0.4
1,375,435	-		PP_1200	0.55	-0.1
1,375,435	-		PP_1200	0.55	+1.0
1,375,723	-		PP_1200	0.70	-1.0
1,375,898	-		PP_1200	0.79	-0.2
1,376,007	+		PP_1200	0.85	-0.1
1,376,008	-		PP_1200	0.85	-0.5
1,376,127	+				-0.4
1,376,128	-				-1.1
1,376,269	+				+0.1
1,376,269	+				-1.2
1,376,270	-				-3.6
1,376,270	-				-0.1
1,376,299	+				-1.2
1,376,299	+				-1.3
1,376,299	+				+0.0
1,376,301	+				+1.7
1,376,301	+				+0.5
1,376,301	+				-0.1
1,376,302	-				+0.6
1,376,302	-				+0.4
1,376,302	-				+1.6
1,376,356	-				+0.0
1,376,356	-				+0.6
1,376,417	-				-1.3
1,376,463	+				-3.2
1,376,463	+				-4.3
1,376,512	+		PP_1201	0.13	-2.1
1,376,512	+		PP_1201	0.13	-2.1
1,376,513	-		PP_1201	0.13	-3.0
1,376,514	+		PP_1201	0.13	-3.4
1,376,515	-		PP_1201	0.14	-2.4
1,376,515	-		PP_1201	0.14	-3.6
1,376,515	-		PP_1201	0.14	-3.3
1,376,515	-		PP_1201	0.14	-2.5
1,376,687	-		PP_1201	0.27	-3.7
1,376,719	+		PP_1201	0.29	-2.1
1,376,821	+		PP_1201	0.37	-3.6
1,376,824	+		PP_1201	0.37	-1.6
1,376,825	-		PP_1201	0.38	-3.8
1,376,825	-		PP_1201	0.38	-4.2
1,376,931	-		PP_1201	0.46	-3.5
1,377,053	-		PP_1201	0.55	-2.2