Strain Fitness in Pseudomonas putida KT2440 around PP_1185

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,359,140	-				+1.9
1,359,215	+				+0.5
1,359,246	+				-1.6
1,359,246	+				-1.3
1,359,246	+				-3.4
1,359,247	-				-0.6
1,359,247	-				-0.9
1,359,247	-				+1.0
1,359,279	+				-1.4
1,359,280	-				-1.7
1,359,280	-				-1.2
1,359,281	+				+0.7
1,359,282	-				-1.0
1,359,363	+		PP_1184	0.19	-0.0
1,359,377	+		PP_1184	0.20	-0.6
1,359,378	-		PP_1184	0.21	+0.7
1,359,378	-		PP_1184	0.21	+0.9
1,359,408	+		PP_1184	0.24	+0.7
1,359,409	-		PP_1184	0.24	+2.3
1,359,752	+		PP_1184	0.67	+0.1
1,359,752	+		PP_1184	0.67	+1.6
1,359,753	-		PP_1184	0.68	+0.9
1,359,753	-		PP_1184	0.68	+0.8
1,359,753	-		PP_1184	0.68	-0.3
1,359,753	-		PP_1184	0.68	+0.6
1,359,753	-		PP_1184	0.68	+1.4
1,359,885	-		PP_1184	0.84	+0.7
1,359,885	-		PP_1184	0.84	+0.5
1,359,890	+				+1.0
1,359,947	-				+0.9
1,360,086	+				+4.7
1,360,086	+				+5.9
1,360,087	-				+6.0
1,360,091	+				+5.8
1,360,092	-				+4.5
1,360,092	-				+4.0
1,360,127	-				+5.7
1,360,231	+		PP_1185	0.16	+5.2
1,360,231	+		PP_1185	0.16	+4.3
1,360,232	-		PP_1185	0.16	+5.8
1,360,304	+		PP_1185	0.28	+4.5
1,360,306	-		PP_1185	0.28	+5.1
1,360,306	-		PP_1185	0.28	+3.3
1,360,324	-		PP_1185	0.31	+0.4
1,360,369	+		PP_1185	0.39	+3.1
1,360,369	+		PP_1185	0.39	+4.0
1,360,369	+		PP_1185	0.39	+4.4
1,360,378	+		PP_1185	0.40	+5.3
1,360,378	+		PP_1185	0.40	+5.6
1,360,378	+		PP_1185	0.40	+5.5
1,360,379	-		PP_1185	0.40	+4.6
1,360,379	-		PP_1185	0.40	+3.3
1,360,379	-		PP_1185	0.40	+4.6
1,360,379	-				+3.6
1,360,467	+		PP_1185	0.55	+4.4
1,360,550	-		PP_1185	0.68	+1.3
1,360,562	-		PP_1185	0.70	+3.0
1,360,621	+		PP_1185	0.80	+3.9
1,360,628	-		PP_1185	0.81	+4.8
1,360,714	+				+2.7
1,360,714	+				+3.3
1,360,729	+				+3.5
1,360,729	+				+3.8
1,360,730	-				+3.4
1,360,730	-				+2.5
1,360,762	+				+4.7
1,360,848	+				+1.4
1,360,848	+				+0.0
1,360,849	-				+2.2
1,360,849	-				+1.6
1,360,874	+				+0.4
1,360,875	-				+2.2
1,360,918	+				+1.4
1,360,918	+				+1.0
1,360,918	+				+2.1
1,360,918	+				+0.6
1,360,918	+				+0.9
1,360,918	+				+1.7
1,360,918	+				+0.2
1,360,919	-				+1.3
1,360,919	-				-3.7
1,360,924	+				-0.5
1,360,924	+				-0.0
1,360,924	+				-0.9
1,360,925	-				+1.5
1,360,925	-				+1.7
1,360,925	-				+2.3
1,360,925	-				+2.4
1,360,986	-				-1.1
1,361,228	+		PP_1186	0.43	+3.5
1,361,229	-		PP_1186	0.43	+0.6
1,361,414	+		PP_1186	0.70	+2.4
1,361,414	+		PP_1186	0.70	+1.1
1,361,415	-		PP_1186	0.71	+0.0
1,361,472	-				+3.9
1,361,588	+				+1.2
1,361,589	-				+1.1
1,361,589	-				+0.7