Strain Fitness in Pseudomonas putida KT2440 around PP_1160

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,333,861	+		PP_1159	0.16	-0.1
1,333,861	+		PP_1159	0.16	-0.5
1,333,862	-		PP_1159	0.16	-0.5
1,333,960	+		PP_1159	0.25	-0.9
1,333,961	-		PP_1159	0.25	+1.4
1,333,961	-		PP_1159	0.25	+0.1
1,333,961	-		PP_1159	0.25	+0.7
1,333,989	+		PP_1159	0.27	-0.8
1,334,147	+		PP_1159	0.41	-0.0
1,334,194	+		PP_1159	0.45	-1.0
1,334,194	+		PP_1159	0.45	+0.8
1,334,195	-		PP_1159	0.45	-0.1
1,334,195	-		PP_1159	0.45	-1.0
1,334,195	-		PP_1159	0.45	-0.8
1,334,195	-		PP_1159	0.45	-1.5
1,334,225	+		PP_1159	0.48	+0.4
1,334,225	+		PP_1159	0.48	+1.3
1,334,226	-		PP_1159	0.48	-0.3
1,334,226	-		PP_1159	0.48	-2.3
1,334,226	-		PP_1159	0.48	+0.5
1,334,301	-		PP_1159	0.54	-0.4
1,334,354	-		PP_1159	0.59	+0.6
1,334,461	+				-0.0
1,334,462	-		PP_1159	0.68	+1.0
1,334,462	-		PP_1159	0.68	+0.7
1,334,462	-		PP_1159	0.68	-0.0
1,334,462	-		PP_1159	0.68	-1.1
1,334,488	+		PP_1159	0.70	-0.0
1,334,489	-		PP_1159	0.70	+0.7
1,334,496	+		PP_1159	0.71	-0.3
1,334,496	+		PP_1159	0.71	+0.2
1,334,496	+		PP_1159	0.71	+0.4
1,334,496	+		PP_1159	0.71	-2.0
1,334,497	-				+3.3
1,334,497	-		PP_1159	0.71	+1.0
1,334,497	-		PP_1159	0.71	+0.9
1,334,553	-		PP_1159	0.76	-0.6
1,334,553	-		PP_1159	0.76	-0.9
1,334,553	-		PP_1159	0.76	-0.5
1,334,587	+		PP_1159	0.79	-1.3
1,334,592	+		PP_1159	0.79	-0.6
1,334,592	+		PP_1159	0.79	-0.0
1,334,593	-		PP_1159	0.79	+0.4
1,334,593	-		PP_1159	0.79	-1.5
1,334,596	+		PP_1159	0.80	-0.0
1,334,597	-		PP_1159	0.80	-0.4
1,334,597	-		PP_1159	0.80	+0.8
1,334,734	+				-0.1
1,334,734	+				-1.4
1,334,734	+				-0.9
1,334,734	+				-0.9
1,334,735	-				-0.3
1,334,735	-				-1.7
1,334,735	-				+1.1
1,334,746	+				-0.2
1,334,746	+				+0.6
1,334,747	-				+0.7
1,334,747	-				-0.6
1,334,747	-				-0.7
1,334,799	-				-0.4
1,335,091	+		PP_1160	0.27	+1.1
1,335,091	+		PP_1160	0.27	+0.1
1,335,092	-		PP_1160	0.27	-0.5
1,335,092	-		PP_1160	0.27	+2.2
1,335,129	+		PP_1160	0.31	+0.4
1,335,130	-		PP_1160	0.31	+0.9
1,335,405	+		PP_1160	0.58	+2.0
1,335,406	-		PP_1160	0.59	+0.0
1,335,532	-		PP_1160	0.71	+2.0
1,335,632	+		PP_1160	0.81	+1.1
1,335,632	+		PP_1160	0.81	-0.0
1,335,633	-		PP_1160	0.82	+0.4
1,335,653	+		PP_1160	0.84	+0.5
1,335,653	+		PP_1160	0.84	-0.3
1,335,654	-		PP_1160	0.84	+0.8
1,335,670	-		PP_1160	0.85	+0.1
1,335,714	+		PP_1160	0.90	-0.9
1,335,715	-		PP_1160	0.90	+0.2
1,335,770	-				-0.1
1,335,869	+		PP_1161	0.12	+0.3
1,335,918	-		PP_1161	0.19	-0.6
1,335,948	-		PP_1161	0.24	+2.0
1,335,965	-		PP_1161	0.26	+0.3
1,335,976	+		PP_1161	0.28	+0.8
1,335,976	+		PP_1161	0.28	-0.4
1,336,120	+		PP_1161	0.50	+1.2
1,336,121	-		PP_1161	0.50	-0.1
1,336,121	-		PP_1161	0.50	+0.5
1,336,142	-		PP_1161	0.53	+0.8
1,336,142	-		PP_1161	0.53	-0.4
1,336,259	-		PP_1161	0.70	+1.9
1,336,334	+		PP_1161	0.81	+1.7
1,336,334	+		PP_1161	0.81	-0.8
1,336,350	+		PP_1161	0.84	+1.8
1,336,432	+				+0.1
1,336,649	+				+1.1
1,336,650	-				-1.7
1,336,650	-				+2.2
1,336,650	-				-0.8
1,336,701	+		PP_1162	0.12	+0.8