Strain Fitness in Pseudomonas putida KT2440 around PP_1108

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,264,672	-		PP_1106	0.26	+0.3
1,264,697	-		PP_1106	0.29	-0.5
1,264,697	-		PP_1106	0.29	-0.0
1,264,763	-		PP_1106	0.35	-2.2
1,264,905	+		PP_1106	0.49	-2.1
1,264,905	+		PP_1106	0.49	+1.2
1,264,906	-		PP_1106	0.49	-3.2
1,265,062	+		PP_1106	0.65	-1.6
1,265,062	+		PP_1106	0.65	+0.1
1,265,063	-		PP_1106	0.65	-1.4
1,265,081	+		PP_1106	0.67	-2.2
1,265,081	+		PP_1106	0.67	-0.7
1,265,088	+		PP_1106	0.67	-1.3
1,265,088	+		PP_1106	0.67	+1.3
1,265,089	-		PP_1106	0.67	+2.5
1,265,089	-		PP_1106	0.67	+0.6
1,265,089	-		PP_1106	0.67	+0.2
1,265,209	-		PP_1106	0.79	-0.1
1,265,283	+		PP_1106	0.87	-0.6
1,265,284	-		PP_1106	0.87	-0.0
1,265,365	-				+0.4
1,265,385	+				+1.5
1,265,385	+				+0.8
1,265,472	+				-0.7
1,265,566	+				+1.5
1,265,566	+				+0.3
1,265,583	+				+0.7
1,265,584	-				+1.0
1,265,661	+				+0.4
1,265,705	+				-1.9
1,265,705	+				+1.7
1,265,868	+		PP_1108	0.13	+0.2
1,265,869	-		PP_1108	0.13	+0.5
1,266,441	+		PP_1108	0.37	+0.4
1,266,441	+		PP_1108	0.37	+1.3
1,266,444	+		PP_1108	0.37	+2.7
1,266,444	+		PP_1108	0.37	+0.0
1,266,445	-		PP_1108	0.37	-3.5
1,266,445	-		PP_1108	0.37	+3.1
1,266,534	+		PP_1108	0.40	-0.8
1,266,558	+		PP_1108	0.41	+1.8
1,266,858	+		PP_1108	0.54	-0.5
1,266,858	+		PP_1108	0.54	+2.4
1,266,859	-		PP_1108	0.54	+0.8
1,266,859	-		PP_1108	0.54	-0.8
1,266,859	-		PP_1108	0.54	-0.3
1,266,859	-		PP_1108	0.54	+1.9
1,266,891	-		PP_1108	0.55	+0.2
1,266,932	-		PP_1108	0.57	+0.5
1,266,932	-		PP_1108	0.57	+1.1
1,266,945	+		PP_1108	0.57	+1.2
1,266,946	-		PP_1108	0.57	-1.0
1,267,093	-		PP_1108	0.63	+1.5
1,267,103	-		PP_1108	0.64	+0.4
1,267,103	-		PP_1108	0.64	-0.3
1,267,479	+		PP_1108	0.79	-2.3
1,267,499	-		PP_1108	0.80	-0.1
1,267,499	-		PP_1108	0.80	-0.4
1,267,530	+		PP_1108	0.81	+2.4
1,267,542	+		PP_1108	0.82	-1.9
1,267,605	+		PP_1108	0.84	+0.7
1,267,605	+		PP_1108	0.84	+1.5
1,267,752	+				+1.6
1,268,029	+				-0.4
1,268,030	-				-0.2
1,268,034	+				-0.7
1,268,034	+				-0.2
1,268,034	+				-0.0
1,268,035	-				+1.2
1,268,035	-				+0.2
1,268,035	-				-3.6
1,268,035	-				-0.0
1,268,037	+				-0.0
1,268,037	+				-0.1
1,268,038	-				+0.1
1,268,038	-				+1.6
1,268,038	-				-1.5
1,268,149	+				-0.0
1,268,149	+				+1.2
1,268,150	-				+0.5
1,268,158	+				-0.5
1,268,159	-				+2.2
1,268,159	-				+0.9
1,268,219	+				-0.3
1,268,258	-		PP_1109	0.12	-0.1
1,268,258	-		PP_1109	0.12	+1.0
1,268,258	-		PP_1109	0.12	+0.4
1,268,259	+		PP_1109	0.13	+0.5
1,268,259	+		PP_1109	0.13	-0.6
1,268,260	-		PP_1109	0.13	-0.3
1,268,260	-		PP_1109	0.13	+0.0
1,268,273	+		PP_1109	0.14	-0.6
1,268,273	+		PP_1109	0.14	-0.1
1,268,273	+		PP_1109	0.14	+0.7
1,268,273	+		PP_1109	0.14	+0.0
1,268,274	-		PP_1109	0.14	+0.3
1,268,274	-		PP_1109	0.14	+1.8
1,268,274	-		PP_1109	0.14	+0.9
1,268,383	+		PP_1109	0.22	+0.4
1,268,383	+		PP_1109	0.22	+0.7
1,268,383	+		PP_1109	0.22	+0.4
1,268,384	-		PP_1109	0.22	+1.4
1,268,400	+		PP_1109	0.23	+0.0
1,268,400	+		PP_1109	0.23	+1.0
1,268,400	+		PP_1109	0.23	+0.6
1,268,401	-		PP_1109	0.23	+1.5
1,268,401	-		PP_1109	0.23	+0.7
1,268,401	-		PP_1109	0.23	+0.5
1,268,401	-		PP_1109	0.23	+0.9
1,268,401	-		PP_1109	0.23	-0.8
1,268,401	-		PP_1109	0.23	-0.1
1,268,401	-		PP_1109	0.23	-0.3
1,268,456	+		PP_1109	0.27	-0.1
1,268,457	-		PP_1109	0.27	+1.1
1,268,548	+		PP_1109	0.34	+0.5
1,268,548	+		PP_1109	0.34	-0.5
1,268,548	+		PP_1109	0.34	+0.8
1,268,548	+		PP_1109	0.34	+0.1
1,268,548	+		PP_1109	0.34	+0.3
1,268,549	-		PP_1109	0.34	+0.0
1,268,549	-		PP_1109	0.34	+0.3
1,268,549	-		PP_1109	0.34	+1.3
1,268,552	+		PP_1109	0.34	-0.2
1,268,552	+		PP_1109	0.34	-0.1
1,268,615	-		PP_1109	0.39	-0.8