Strain Fitness in Pseudomonas putida KT2440 around PP_1032

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,177,050	+				+0.5
1,177,050	+				+0.4
1,177,050	+				+0.4
1,177,050	+				-0.5
1,177,057	+				-0.2
1,177,057	+				+1.1
1,177,057	+				-0.7
1,178,733	+				-0.4
1,178,733	+				-0.9
1,178,734	-				+2.4
1,178,833	+				+0.9
1,178,833	+				+0.4
1,178,834	-				+1.5
1,178,834	-				+1.0
1,178,922	+				-0.4
1,178,923	-				-0.5
1,178,923	-				+0.9
1,178,926	+				-0.7
1,178,952	+				+0.5
1,178,952	+				+1.7
1,178,952	+				-0.3
1,178,953	-				-1.6
1,178,953	-				-1.1
1,178,953	-				-0.7
1,178,954	+				-1.3
1,178,954	+				-0.2
1,178,955	-				+1.6
1,178,958	+				-0.6
1,178,958	+				+0.4
1,178,958	+				-0.1
1,178,958	+				+0.2
1,178,958	+				-2.0
1,178,958	+				+2.0
1,178,958	+				+1.8
1,178,958	+				+0.9
1,178,959	-				+1.8
1,178,959	-				+1.4
1,178,959	-				+1.1
1,178,959	-				-0.5
1,178,959	-				+0.5
1,178,959	-				+0.6
1,178,959	-				+1.3
1,178,964	+				-0.1
1,179,059	+		PP_1033	0.14	+0.1
1,179,059	+		PP_1033	0.14	-0.4
1,179,060	-		PP_1033	0.14	+0.3
1,179,163	+		PP_1033	0.19	-1.4
1,179,164	-		PP_1033	0.19	+0.2
1,179,183	-		PP_1033	0.20	+0.7
1,179,183	-		PP_1033	0.20	-0.4
1,179,272	+		PP_1033	0.24	+0.1
1,179,272	+		PP_1033	0.24	+0.5
1,179,273	-		PP_1033	0.24	-1.5
1,179,273	-		PP_1033	0.24	-1.0
1,179,377	+		PP_1033	0.30	-1.4
1,179,377	+		PP_1033	0.30	-0.3
1,179,378	-		PP_1033	0.30	-0.3
1,179,402	+		PP_1033	0.31	-1.3
1,179,402	+		PP_1033	0.31	-1.7
1,179,408	+		PP_1033	0.31	+0.7
1,179,475	-		PP_1033	0.34	-1.1
1,179,520	+		PP_1033	0.37	+1.8
1,179,521	-		PP_1033	0.37	+0.5
1,179,627	+		PP_1033	0.42	-2.6
1,179,627	+		PP_1033	0.42	-0.1
1,179,627	+		PP_1033	0.42	+0.2
1,179,628	-		PP_1033	0.42	-0.1