Strain Fitness in Pseudomonas putida KT2440 around PP_0964

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,102,248	+		PP_0961	0.51	+0.4
1,102,249	-		PP_0961	0.52	+1.5
1,102,249	-		PP_0961	0.52	+0.5
1,102,249	-		PP_0961	0.52	-1.2
1,102,253	+		PP_0961	0.52	-0.8
1,102,253	+		PP_0961	0.52	+0.5
1,102,254	-		PP_0961	0.52	+0.2
1,102,281	-		PP_0961	0.56	-0.9
1,102,356	+		PP_0961	0.68	-0.6
1,102,356	+		PP_0961	0.68	+0.1
1,102,356	+		PP_0961	0.68	+1.3
1,102,357	-		PP_0961	0.68	+1.2
1,102,394	+		PP_0961	0.74	-0.8
1,102,395	-		PP_0961	0.74	+0.2
1,102,575	+				-0.4
1,102,575	+				+0.0
1,102,575	+				-0.9
1,102,575	+				+0.0
1,102,575	+				-1.5
1,102,576	-				+0.1
1,102,576	-				-0.5
1,102,623	-		PP_0962	0.21	-0.0
1,102,741	-		PP_0962	0.60	+2.0
1,102,751	+		PP_0962	0.63	+0.6
1,102,751	+		PP_0962	0.63	-0.3
1,102,810	+		PP_0962	0.83	+1.0
1,102,810	+		PP_0962	0.83	+0.5
1,102,832	+				-0.4
1,102,832	+				+1.4
1,102,832	+				-0.3
1,102,833	-				-2.1
1,102,833	-				-0.7
1,102,833	-				-1.2
1,102,833	-				+0.6
1,102,859	+				-0.6
1,102,859	+				-0.3
1,102,860	-				+1.7
1,102,860	-				-1.2
1,102,934	+				+0.8
1,102,989	+				-2.3
1,102,989	+				+1.4
1,102,996	+				-0.8
1,103,126	+		PP_0963	0.61	-0.0
1,103,126	+		PP_0963	0.61	-1.1
1,103,126	+				+4.0
1,103,126	+		PP_0963	0.61	-1.2
1,103,126	+		PP_0963	0.61	+0.5
1,103,172	+		PP_0963	0.80	+0.8
1,104,505	+				+0.8
1,104,506	-				+1.5
1,104,506	-				+0.1
1,104,583	-				-1.0
1,104,628	+				-2.8
1,104,732	+		PP_0965	0.21	+0.4
1,104,732	+		PP_0965	0.21	+0.1
1,104,732	+		PP_0965	0.21	+0.3
1,104,732	+		PP_0965	0.21	+1.3
1,104,732	+		PP_0965	0.21	-0.3
1,104,733	-		PP_0965	0.21	+0.8
1,104,770	+		PP_0965	0.27	-0.3
1,104,770	+		PP_0965	0.27	+0.3
1,104,771	-		PP_0965	0.27	+1.4
1,104,771	-		PP_0965	0.27	+1.1
1,104,771	-		PP_0965	0.27	-0.0
1,104,771	-		PP_0965	0.27	-0.0
1,104,771	-		PP_0965	0.27	-0.0
1,104,827	+		PP_0965	0.36	-2.1
1,104,845	+		PP_0965	0.39	+1.0
1,104,846	-		PP_0965	0.39	+0.4
1,104,846	-		PP_0965	0.39	+0.5
1,104,898	-		PP_0965	0.47	-0.3
1,104,954	+		PP_0965	0.56	+0.4
1,104,955	-		PP_0965	0.56	-0.4
1,104,955	-		PP_0965	0.56	-0.8
1,104,966	-		PP_0965	0.58	+0.2
1,104,966	-		PP_0965	0.58	+4.1
1,104,966	-		PP_0965	0.58	-0.0
1,104,968	+		PP_0965	0.58	-0.1
1,104,968	+		PP_0965	0.58	-0.9
1,104,969	-		PP_0965	0.58	-0.9
1,105,008	-		PP_0965	0.64	+1.1
1,105,269	-				-0.7
1,105,279	+				+0.2
1,105,280	-				+0.5
1,105,317	-				+0.9
1,105,326	+				+1.5
1,105,326	+				+0.0
1,105,422	-				+1.9
1,105,441	+				+1.3
1,105,441	+				-1.1
1,105,441	+				+0.3
1,105,441	+				-1.3
1,105,442	-				-0.8
1,105,442	-				+0.8
1,105,442	-				+0.7
1,105,481	-				-0.5
1,105,503	+				-0.5
1,105,503	+				-1.8
1,105,503	+				-1.5
1,105,504	-				+0.4
1,105,504	-				-0.6
1,105,504	-				+1.2
1,105,504	-				-0.4
1,105,506	+				+1.0
1,105,507	-				+1.0
1,105,507	-				-1.7
1,105,507	-				-1.3