Strain Fitness in Pseudomonas putida KT2440 around PP_0943

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,087,764	+		PP_0942	0.45	+1.9
1,087,882	+		PP_0942	0.54	-0.8
1,087,986	-		PP_0942	0.62	+1.0
1,087,986	-		PP_0942	0.62	+0.4
1,088,040	-		PP_0942	0.66	+0.6
1,088,040	-		PP_0942	0.66	-0.4
1,088,091	+		PP_0942	0.70	-0.3
1,088,091	+		PP_0942	0.70	-0.3
1,088,091	+		PP_0942	0.70	+0.1
1,088,091	+		PP_0942	0.70	+1.1
1,088,091	+		PP_0942	0.70	+0.7
1,088,091	+		PP_0942	0.70	+0.5
1,088,130	+		PP_0942	0.72	+0.3
1,088,130	+		PP_0942	0.72	-2.1
1,088,131	-		PP_0942	0.72	-1.0
1,088,131	-		PP_0942	0.72	-0.6
1,088,145	+		PP_0942	0.74	+1.0
1,088,145	+		PP_0942	0.74	-2.0
1,088,146	-		PP_0942	0.74	+0.9
1,088,146	-		PP_0942	0.74	+1.0
1,088,313	+		PP_0942	0.86	-0.4
1,088,313	+		PP_0942	0.86	+1.9
1,088,453	+				+1.0
1,088,510	-				+0.4
1,088,546	+				-1.9
1,088,547	-				+0.6
1,088,562	+				+1.2
1,088,562	+				+0.3
1,088,563	-				+2.2
1,088,589	+				-2.0
1,088,589	+				+1.0
1,088,589	+				-0.1
1,088,590	-				+0.2
1,088,590	-				-1.1
1,088,627	+				+0.1
1,088,627	+				-1.0
1,088,627	+				+0.8
1,088,628	-				+2.0
1,088,785	+				+1.4
1,088,863	+		PP_0943	0.27	+0.7
1,088,863	+		PP_0943	0.27	-0.0
1,088,864	-		PP_0943	0.27	+0.0
1,088,864	-		PP_0943	0.27	+0.4
1,088,864	-		PP_0943	0.27	+1.1
1,088,864	-		PP_0943	0.27	-0.0
1,088,882	-		PP_0943	0.32	+0.2
1,089,070	+		PP_0943	0.79	+1.8
1,089,071	-		PP_0943	0.80	+0.2
1,089,071	-		PP_0943	0.80	+2.0
1,089,260	-				+0.5
1,089,493	-		PP_0944	0.26	-1.2
1,089,493	-		PP_0944	0.26	-1.0
1,089,493	-		PP_0944	0.26	-0.8
1,089,628	-		PP_0944	0.35	-2.1
1,089,657	+		PP_0944	0.37	+0.4
1,089,657	+		PP_0944	0.37	+0.1
1,089,658	-		PP_0944	0.38	-0.7
1,089,658	-		PP_0944	0.38	-1.1
1,089,658	-		PP_0944	0.38	-1.4
1,089,665	+		PP_0944	0.38	-1.2
1,089,665	+		PP_0944	0.38	+0.3
1,089,665	+		PP_0944	0.38	-1.0
1,089,665	+		PP_0944	0.38	-2.4
1,089,666	-		PP_0944	0.38	+0.3
1,089,666	-		PP_0944	0.38	-2.1
1,089,666	-		PP_0944	0.38	+1.7
1,089,682	+		PP_0944	0.39	-1.5
1,089,683	-		PP_0944	0.39	-0.4
1,089,683	-		PP_0944	0.39	-2.6