Strain Fitness in Pseudomonas putida KT2440 around PP_0897

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,036,908	-				-0.7
1,037,147	+		PP_0896	0.30	-0.9
1,037,147	+		PP_0896	0.30	+0.3
1,037,147	+		PP_0896	0.30	-0.8
1,037,148	-		PP_0896	0.30	-0.7
1,037,148	-		PP_0896	0.30	-0.5
1,037,148	-		PP_0896	0.30	-0.4
1,037,192	+		PP_0896	0.35	-0.0
1,037,351	+		PP_0896	0.54	+1.8
1,037,425	+		PP_0896	0.62	+1.5
1,037,425	+		PP_0896	0.62	+0.3
1,037,426	-		PP_0896	0.62	+0.7
1,037,458	+		PP_0896	0.66	-1.6
1,037,459	-		PP_0896	0.66	+0.5
1,037,459	-		PP_0896	0.66	-1.0
1,037,668	-				+1.8
1,037,820	+				+1.6
1,037,873	-				-0.6
1,037,873	-				+0.5
1,039,444	-				-3.0
1,039,514	-				-0.1
1,039,514	-				+0.7
1,039,514	-				+0.0
1,039,608	+				-0.3
1,039,608	+				+0.7
1,039,609	-				-0.4
1,039,738	-		PP_0899	0.10	-0.2
1,039,738	-		PP_0899	0.10	+1.2
1,039,738	-		PP_0899	0.10	-0.8
1,039,738	-		PP_0899	0.10	-0.1
1,039,897	-		PP_0899	0.27	+1.9
1,039,897	-		PP_0899	0.27	-0.5
1,040,026	+		PP_0899	0.41	+2.0
1,040,046	+		PP_0899	0.44	-1.1
1,040,047	-		PP_0899	0.44	-0.2
1,040,047	-		PP_0899	0.44	+0.0
1,040,047	-		PP_0899	0.44	-1.0
1,040,193	+		PP_0899	0.60	-1.4
1,040,193	+		PP_0899	0.60	-0.2
1,040,194	-		PP_0899	0.60	-0.2
1,040,194	-		PP_0899	0.60	+1.0
1,040,264	+		PP_0899	0.67	+0.6
1,040,314	+		PP_0899	0.73	-0.5
1,040,314	+		PP_0899	0.73	+0.5
1,040,314	+		PP_0899	0.73	+1.6
1,040,315	-		PP_0899	0.73	+0.0
1,040,315	-		PP_0899	0.73	+0.8
1,040,315	-		PP_0899	0.73	-0.2
1,040,315	-		PP_0899	0.73	-0.5
1,040,315	-		PP_0899	0.73	-1.1
1,040,315	-		PP_0899	0.73	+0.1
1,040,315	-		PP_0899	0.73	-1.1