Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0860 and PP_0861 are separated by 231 nucleotides PP_0861 and PP_0862 are separated by 221 nucleotides PP_0862 and PP_0863 are separated by 3 nucleotides
PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595
_0860
PP_0861: PP_0861 - outer membrane ferric siderophore receptor, at 997,827 to 1,000,118
_0861
PP_0862: PP_0862 - PKHD-type hydroxylase PP_0862, at 1,000,340 to 1,001,020
_0862
PP_0863: PP_0863 - conserved protein of unknown function, at 1,001,024 to 1,001,794
_0863
Position (kb) 997
998
999
1000
1001 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 996.970 kb on + strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.194 kb on - strand, within PP_0860 at 997.291 kb on + strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.465 kb on - strand at 997.465 kb on - strand at 997.507 kb on + strand at 997.508 kb on - strand at 997.508 kb on - strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.732 kb on + strand at 997.733 kb on - strand at 997.906 kb on + strand at 997.909 kb on + strand at 997.910 kb on - strand at 997.910 kb on - strand at 997.969 kb on + strand at 997.969 kb on + strand at 997.988 kb on - strand at 997.992 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 998.032 kb on + strand at 998.032 kb on + strand at 998.033 kb on - strand at 998.090 kb on - strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.198 kb on - strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.288 kb on + strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.393 kb on - strand, within PP_0861 at 998.477 kb on + strand, within PP_0861 at 998.478 kb on - strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.633 kb on - strand, within PP_0861 at 998.641 kb on + strand, within PP_0861 at 998.641 kb on + strand, within PP_0861 at 998.662 kb on + strand, within PP_0861 at 998.663 kb on - strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.719 kb on + strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.720 kb on - strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.758 kb on + strand, within PP_0861 at 998.759 kb on - strand, within PP_0861 at 998.759 kb on - strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.822 kb on + strand, within PP_0861 at 998.823 kb on - strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.824 kb on + strand, within PP_0861 at 998.905 kb on + strand, within PP_0861 at 999.012 kb on - strand, within PP_0861 at 999.103 kb on + strand, within PP_0861 at 999.103 kb on + strand at 999.103 kb on + strand at 999.229 kb on + strand, within PP_0861 at 999.313 kb on + strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.314 kb on - strand, within PP_0861 at 999.355 kb on + strand, within PP_0861 at 999.358 kb on + strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.359 kb on - strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.427 kb on + strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.428 kb on - strand, within PP_0861 at 999.508 kb on + strand, within PP_0861 at 999.509 kb on - strand, within PP_0861 at 999.526 kb on + strand, within PP_0861 at 999.526 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.597 kb on + strand, within PP_0861 at 999.598 kb on - strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.727 kb on + strand, within PP_0861 at 999.728 kb on - strand, within PP_0861 at 999.731 kb on + strand, within PP_0861 at 999.731 kb on + strand, within PP_0861 at 999.732 kb on - strand, within PP_0861 at 999.732 kb on - strand, within PP_0861 at 999.807 kb on - strand, within PP_0861 at 999.903 kb on + strand at 999.904 kb on - strand at 999.950 kb on - strand at 1000.034 kb on - strand at 1000.036 kb on - strand at 1000.104 kb on + strand at 1000.104 kb on + strand at 1000.104 kb on + strand at 1000.105 kb on - strand at 1000.105 kb on - strand at 1000.105 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.109 kb on - strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.141 kb on - strand at 1000.234 kb on + strand at 1000.260 kb on + strand at 1000.260 kb on + strand at 1000.261 kb on - strand at 1000.261 kb on - strand at 1000.325 kb on - strand at 1000.442 kb on + strand, within PP_0862 at 1000.718 kb on + strand, within PP_0862 at 1000.719 kb on - strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.751 kb on + strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.752 kb on - strand, within PP_0862 at 1000.796 kb on + strand, within PP_0862 at 1000.796 kb on + strand, within PP_0862 at 1000.848 kb on - strand, within PP_0862 at 1000.985 kb on + strand at 1000.985 kb on + strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.986 kb on - strand at 1000.990 kb on + strand at 1000.990 kb on + strand at 1000.991 kb on - strand at 1000.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 996,970 + PP_0860 0.75 +0.5 996,971 - PP_0860 0.75 +0.6 996,971 - PP_0860 0.75 -0.3 996,971 - PP_0860 0.75 +0.2 997,007 - PP_0860 0.77 +0.4 997,007 - PP_0860 0.77 -0.1 997,007 - PP_0860 0.77 +0.9 997,194 - PP_0860 0.84 +1.9 997,291 + PP_0860 0.88 -0.2 997,292 - PP_0860 0.88 -0.0 997,292 - PP_0860 0.88 -0.8 997,464 + -0.5 997,464 + -1.5 997,464 + -1.5 997,464 + -1.8 997,464 + -1.8 997,465 - -1.2 997,465 - -0.5 997,507 + -0.3 997,508 - +2.6 997,508 - +0.9 997,642 + -0.1 997,642 + -0.5 997,642 + -1.9 997,643 - -1.6 997,643 - -1.9 997,643 - -2.1 997,643 - +1.0 997,732 + +0.7 997,733 - +0.9 997,906 + -0.7 997,909 + +0.1 997,910 - -1.7 997,910 - -1.3 997,969 + +0.5 997,969 + -1.6 997,988 - -1.8 997,992 + +1.4 997,996 + -3.8 997,996 + -0.2 997,996 + +1.4 997,996 + +0.5 997,996 + +1.1 997,997 - +0.9 997,997 - +0.9 997,997 - +0.3 997,997 - -2.9 998,032 + -1.8 998,032 + +1.0 998,033 - -0.4 998,090 - PP_0861 0.11 -1.9 998,191 + PP_0861 0.16 +0.6 998,191 + PP_0861 0.16 -0.4 998,191 + PP_0861 0.16 +0.3 998,191 + PP_0861 0.16 -0.3 998,192 - PP_0861 0.16 +0.0 998,192 - PP_0861 0.16 -0.4 998,192 - PP_0861 0.16 +0.1 998,192 - PP_0861 0.16 -1.7 998,192 - PP_0861 0.16 -0.1 998,192 - PP_0861 0.16 -1.0 998,192 - PP_0861 0.16 +0.2 998,197 + PP_0861 0.16 +0.8 998,197 + PP_0861 0.16 +0.3 998,197 + PP_0861 0.16 +0.0 998,198 - PP_0861 0.16 -1.2 998,284 + PP_0861 0.20 -0.2 998,284 + PP_0861 0.20 -1.2 998,284 + PP_0861 0.20 -1.3 998,284 + PP_0861 0.20 -0.2 998,288 + PP_0861 0.20 -0.1 998,289 - PP_0861 0.20 -1.5 998,289 - PP_0861 0.20 +0.7 998,289 - PP_0861 0.20 -0.5 998,393 - PP_0861 0.25 -0.0 998,477 + PP_0861 0.28 +1.0 998,478 - PP_0861 0.28 +0.1 998,521 + PP_0861 0.30 -0.5 998,521 + PP_0861 0.30 +0.0 998,521 + PP_0861 0.30 +1.2 998,522 - PP_0861 0.30 -0.1 998,522 - PP_0861 0.30 +0.2 998,530 + PP_0861 0.31 +1.4 998,530 + +0.7 998,530 + PP_0861 0.31 -0.1 998,530 + PP_0861 0.31 +2.3 998,530 + PP_0861 0.31 +0.1 998,530 + PP_0861 0.31 -0.4 998,530 + PP_0861 0.31 +0.2 998,531 - PP_0861 0.31 +0.1 998,531 - PP_0861 0.31 -0.5 998,531 - PP_0861 0.31 +0.7 998,531 - PP_0861 0.31 +0.5 998,531 - PP_0861 0.31 +0.4 998,633 - PP_0861 0.35 +1.0 998,641 + PP_0861 0.36 -0.6 998,641 + PP_0861 0.36 +2.6 998,662 + PP_0861 0.36 -0.3 998,663 - PP_0861 0.36 -0.0 998,719 + PP_0861 0.39 +0.7 998,719 + PP_0861 0.39 +1.2 998,719 + PP_0861 0.39 +0.7 998,720 - PP_0861 0.39 +1.1 998,720 - PP_0861 0.39 -0.2 998,720 - PP_0861 0.39 -2.1 998,758 + PP_0861 0.41 -1.8 998,758 + PP_0861 0.41 -1.1 998,758 + PP_0861 0.41 -0.0 998,759 - PP_0861 0.41 +2.9 998,759 - PP_0861 0.41 +0.9 998,822 + PP_0861 0.43 -0.2 998,822 + PP_0861 0.43 -1.1 998,822 + PP_0861 0.43 +1.2 998,823 - PP_0861 0.43 -1.2 998,824 + PP_0861 0.43 -2.4 998,824 + PP_0861 0.43 -1.3 998,824 + PP_0861 0.43 +1.0 998,824 + PP_0861 0.43 +0.7 998,905 + PP_0861 0.47 -0.3 999,012 - PP_0861 0.52 +0.2 999,103 + PP_0861 0.56 +0.5 999,103 + -1.2 999,103 + +1.4 999,229 + PP_0861 0.61 +0.0 999,313 + PP_0861 0.65 +0.6 999,314 - PP_0861 0.65 +0.6 999,314 - PP_0861 0.65 -0.6 999,314 - PP_0861 0.65 -1.3 999,355 + PP_0861 0.67 +1.6 999,358 + PP_0861 0.67 +0.5 999,359 - PP_0861 0.67 -0.2 999,359 - PP_0861 0.67 +0.8 999,359 - PP_0861 0.67 -0.4 999,427 + PP_0861 0.70 -0.3 999,427 + PP_0861 0.70 -0.1 999,427 + PP_0861 0.70 +2.2 999,427 + PP_0861 0.70 +0.1 999,427 + PP_0861 0.70 -0.2 999,428 - PP_0861 0.70 +0.5 999,428 - PP_0861 0.70 -1.4 999,428 - PP_0861 0.70 +0.5 999,428 - PP_0861 0.70 +0.7 999,508 + PP_0861 0.73 -0.0 999,509 - PP_0861 0.73 -0.7 999,526 + PP_0861 0.74 +0.2 999,526 + PP_0861 0.74 +0.3 999,597 + PP_0861 0.77 -2.0 999,597 + PP_0861 0.77 -0.9 999,597 + PP_0861 0.77 +0.0 999,598 - PP_0861 0.77 +1.1 999,727 + PP_0861 0.83 +0.4 999,727 + PP_0861 0.83 -1.1 999,727 + PP_0861 0.83 +1.2 999,727 + PP_0861 0.83 +2.3 999,728 - PP_0861 0.83 +2.2 999,731 + PP_0861 0.83 +0.5 999,731 + PP_0861 0.83 +1.4 999,732 - PP_0861 0.83 -0.1 999,732 - PP_0861 0.83 +0.3 999,807 - PP_0861 0.86 -0.3 999,903 + +0.3 999,904 - -1.3 999,950 - +0.1 1,000,034 - -1.2 1,000,036 - -0.0 1,000,104 + +0.8 1,000,104 + +1.8 1,000,104 + -2.5 1,000,105 - -0.1 1,000,105 - -0.7 1,000,105 - -0.2 1,000,109 - -1.7 1,000,109 - -0.4 1,000,109 - -0.3 1,000,109 - -0.8 1,000,140 + -0.0 1,000,140 + +0.1 1,000,141 - -1.0 1,000,234 + -0.4 1,000,260 + +0.0 1,000,260 + +0.5 1,000,261 - -0.3 1,000,261 - -1.0 1,000,325 - -0.8 1,000,442 + PP_0862 0.15 -0.2 1,000,718 + PP_0862 0.56 +1.0 1,000,719 - PP_0862 0.56 +0.4 1,000,751 + PP_0862 0.60 -1.9 1,000,751 + PP_0862 0.60 +0.7 1,000,751 + PP_0862 0.60 -0.5 1,000,752 - PP_0862 0.60 -2.0 1,000,752 - PP_0862 0.60 -1.2 1,000,752 - PP_0862 0.60 -0.7 1,000,752 - PP_0862 0.60 -0.9 1,000,752 - PP_0862 0.60 -0.6 1,000,796 + PP_0862 0.67 +2.5 1,000,796 + PP_0862 0.67 +0.1 1,000,848 - PP_0862 0.75 -1.3 1,000,985 + +0.0 1,000,985 + +0.1 1,000,986 - -1.0 1,000,986 - +0.7 1,000,986 - -0.6 1,000,986 - -1.0 1,000,990 + +0.9 1,000,990 + -0.7 1,000,991 - +0.5 1,000,991 - -0.6
Or see this region's nucleotide sequence