Strain Fitness in Pseudomonas putida KT2440 around PP_0831

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0829 and PP_0830 are separated by 10 nucleotidesPP_0830 and PP_0831 are separated by 167 nucleotidesPP_0831 and PP_t68 are separated by 330 nucleotidesPP_t68 and PP_0832 are separated by 105 nucleotides PP_0829: PP_0829 - conserved protein of unknown function, at 967,035 to 967,331 _0829 PP_0830: PP_0830 - Acetyltransferase, GNAT family, at 967,342 to 967,821 _0830 PP_0831: PP_0831 - hypothetical protein, at 967,989 to 968,567 _0831 PP_t68: PP_t68 - tRNA-Leu, at 968,898 to 968,982 _t68 PP_0832: PP_0832 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 969,088 to 970,137 _0832 Position (kb) 967 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 967.101 kb on + strand, within PP_0829at 967.101 kb on + strand, within PP_0829at 967.102 kb on - strand, within PP_0829at 967.102 kb on - strand, within PP_0829at 967.106 kb on + strand, within PP_0829at 967.118 kb on - strand, within PP_0829at 967.118 kb on - strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.224 kb on + strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.343 kb on + strandat 967.351 kb on + strandat 967.351 kb on + strandat 967.352 kb on - strandat 967.352 kb on - strandat 967.499 kb on + strand, within PP_0830at 967.499 kb on + strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.547 kb on - strand, within PP_0830at 967.547 kb on - strand, within PP_0830at 967.579 kb on + strand, within PP_0830at 967.597 kb on + strand, within PP_0830at 967.597 kb on + strand, within PP_0830at 967.598 kb on - strand, within PP_0830at 967.598 kb on - strand, within PP_0830at 967.598 kb on - strand, within PP_0830at 967.718 kb on + strand, within PP_0830at 967.718 kb on + strand, within PP_0830at 967.718 kb on + strand, within PP_0830at 967.719 kb on - strand, within PP_0830at 967.719 kb on - strand, within PP_0830at 967.739 kb on + strand, within PP_0830at 967.739 kb on + strand, within PP_0830at 967.739 kb on + strand, within PP_0830at 967.739 kb on + strand, within PP_0830at 967.740 kb on - strand, within PP_0830at 967.740 kb on - strand, within PP_0830at 967.740 kb on - strandat 967.740 kb on - strand, within PP_0830at 967.740 kb on - strand, within PP_0830at 967.776 kb on + strandat 967.882 kb on + strandat 967.956 kb on + strandat 967.956 kb on + strandat 967.956 kb on + strandat 967.956 kb on + strandat 967.956 kb on + strandat 967.957 kb on - strandat 968.065 kb on + strand, within PP_0831at 968.071 kb on + strand, within PP_0831at 968.071 kb on + strand, within PP_0831at 968.072 kb on - strand, within PP_0831at 968.120 kb on + strand, within PP_0831at 968.121 kb on - strand, within PP_0831at 968.270 kb on - strand, within PP_0831at 968.288 kb on + strand, within PP_0831at 968.389 kb on + strand, within PP_0831at 968.389 kb on + strand, within PP_0831at 968.389 kb on + strand, within PP_0831at 968.389 kb on + strand, within PP_0831at 968.436 kb on + strand, within PP_0831at 968.436 kb on + strand, within PP_0831at 968.436 kb on + strand, within PP_0831at 968.437 kb on - strand, within PP_0831at 968.581 kb on + strandat 968.582 kb on - strandat 968.599 kb on + strandat 968.599 kb on + strandat 968.600 kb on - strandat 968.764 kb on + strandat 968.791 kb on - strandat 968.791 kb on - strandat 968.802 kb on - strandat 968.802 kb on - strandat 968.876 kb on + strandat 968.877 kb on - strandat 968.877 kb on - strandat 969.055 kb on - strandat 969.232 kb on + strand, within PP_0832at 969.232 kb on + strand, within PP_0832at 969.233 kb on - strand, within PP_0832at 969.395 kb on + strand, within PP_0832at 969.396 kb on - strand, within PP_0832at 969.529 kb on + strand, within PP_0832at 969.529 kb on + strand, within PP_0832at 969.529 kb on + strand, within PP_0832at 969.531 kb on + strand, within PP_0832at 969.532 kb on - strand, within PP_0832

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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967,101 + PP_0829 0.22 -0.2
967,101 + PP_0829 0.22 +0.2
967,102 - PP_0829 0.23 -0.7
967,102 - PP_0829 0.23 -1.7
967,106 + PP_0829 0.24 -0.1
967,118 - PP_0829 0.28 -1.0
967,118 - PP_0829 0.28 -0.8
967,187 + PP_0829 0.51 +0.8
967,187 + PP_0829 0.51 -0.4
967,187 + PP_0829 0.51 +0.2
967,187 + PP_0829 0.51 -0.7
967,187 + PP_0829 0.51 +0.1
967,187 + PP_0829 0.51 -0.1
967,187 + PP_0829 0.51 -0.3
967,187 + PP_0829 0.51 +0.3
967,188 - PP_0829 0.52 -1.0
967,188 - PP_0829 0.52 -0.9
967,188 - PP_0829 0.52 -2.6
967,188 - PP_0829 0.52 -1.0
967,188 - PP_0829 0.52 +0.3
967,188 - PP_0829 0.52 -0.6
967,188 - PP_0829 0.52 -0.8
967,188 - PP_0829 0.52 -2.3
967,188 - PP_0829 0.52 +0.3
967,188 - PP_0829 0.52 +0.2
967,224 + PP_0829 0.64 +2.6
967,225 - PP_0829 0.64 -1.0
967,225 - PP_0829 0.64 -1.5
967,225 - PP_0829 0.64 +0.3
967,267 + PP_0829 0.78 -1.5
967,267 + PP_0829 0.78 +1.0
967,267 + PP_0829 0.78 -0.5
967,267 + PP_0829 0.78 +0.3
967,267 + PP_0829 0.78 +0.8
967,267 + PP_0829 0.78 +0.1
967,267 + PP_0829 0.78 +0.8
967,267 + PP_0829 0.78 -0.1
967,268 - PP_0829 0.78 +1.6
967,268 - PP_0829 0.78 +0.9
967,268 - PP_0829 0.78 -1.4
967,268 - PP_0829 0.78 +0.4
967,268 - PP_0829 0.78 -1.1
967,343 + +1.1
967,351 + +0.0
967,351 + +0.4
967,352 - -1.7
967,352 - +1.0
967,499 + PP_0830 0.33 +0.0
967,499 + PP_0830 0.33 -1.3
967,500 - PP_0830 0.33 +0.0
967,500 - PP_0830 0.33 +0.5
967,500 - PP_0830 0.33 -0.0
967,547 - PP_0830 0.43 -1.1
967,547 - PP_0830 0.43 -0.2
967,579 + PP_0830 0.49 +0.2
967,597 + PP_0830 0.53 -0.6
967,597 + PP_0830 0.53 -1.8
967,598 - PP_0830 0.53 -2.4
967,598 - PP_0830 0.53 -2.1
967,598 - PP_0830 0.53 +0.4
967,718 + PP_0830 0.78 +0.2
967,718 + PP_0830 0.78 +0.5
967,718 + PP_0830 0.78 -0.7
967,719 - PP_0830 0.79 +0.4
967,719 - PP_0830 0.79 -2.0
967,739 + PP_0830 0.83 +1.0
967,739 + PP_0830 0.83 +0.9
967,739 + PP_0830 0.83 -0.1
967,739 + PP_0830 0.83 -1.9
967,740 - PP_0830 0.83 +0.4
967,740 - PP_0830 0.83 +1.5
967,740 - +0.6
967,740 - PP_0830 0.83 +1.1
967,740 - PP_0830 0.83 -0.0
967,776 + -1.0
967,882 + -2.6
967,956 + +0.1
967,956 + -0.2
967,956 + -1.4
967,956 + +0.2
967,956 + +0.7
967,957 - -1.7
968,065 + PP_0831 0.13 -1.1
968,071 + PP_0831 0.14 -1.2
968,071 + PP_0831 0.14 -0.2
968,072 - PP_0831 0.14 -1.2
968,120 + PP_0831 0.23 -2.1
968,121 - PP_0831 0.23 +0.2
968,270 - PP_0831 0.49 +0.0
968,288 + PP_0831 0.52 -0.2
968,389 + PP_0831 0.69 -0.5
968,389 + PP_0831 0.69 -0.3
968,389 + PP_0831 0.69 -2.3
968,389 + PP_0831 0.69 -0.5
968,436 + PP_0831 0.77 -2.2
968,436 + PP_0831 0.77 -1.3
968,436 + PP_0831 0.77 -1.5
968,437 - PP_0831 0.77 +0.4
968,581 + -0.8
968,582 - -0.7
968,599 + +0.6
968,599 + -2.0
968,600 - -0.4
968,764 + +1.9
968,791 - -1.8
968,791 - -1.0
968,802 - -0.6
968,802 - -1.7
968,876 + -1.7
968,877 - +0.4
968,877 - -0.1
969,055 - -2.4
969,232 + PP_0832 0.14 +0.2
969,232 + PP_0832 0.14 -1.0
969,233 - PP_0832 0.14 +0.4
969,395 + PP_0832 0.29 -1.6
969,396 - PP_0832 0.29 +0.8
969,529 + PP_0832 0.42 -0.9
969,529 + PP_0832 0.42 -0.6
969,529 + PP_0832 0.42 +0.8
969,531 + PP_0832 0.42 -1.4
969,532 - PP_0832 0.42 -1.5

Or see this region's nucleotide sequence