Strain Fitness in Pseudomonas putida KT2440 around PP_0751

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
867,215	-		PP_0749	0.30	+0.5
867,215	-		PP_0749	0.30	-2.6
867,227	+		PP_0749	0.33	-3.8
867,382	+		PP_0749	0.66	-1.2
867,382	+		PP_0749	0.66	+0.1
867,382	+		PP_0749	0.66	-0.6
867,382	+		PP_0749	0.66	-0.7
867,382	+		PP_0749	0.66	-0.7
867,383	-		PP_0749	0.66	-1.9
867,383	-		PP_0749	0.66	+0.1
867,383	-		PP_0749	0.66	-0.2
867,383	-		PP_0749	0.66	+0.1
867,431	-		PP_0749	0.76	+1.7
867,534	+				-0.6
867,534	+				+1.5
867,535	-				-0.8
867,535	-				-1.1
867,535	-				+1.5
867,535	-				-1.5
867,617	+				-2.0
867,617	+				+0.5
867,634	+		PP_0750	0.15	-0.9
867,660	+		PP_0750	0.23	-0.1
867,660	+				+0.4
867,660	+		PP_0750	0.23	+0.2
867,661	-		PP_0750	0.23	-2.2
867,661	-		PP_0750	0.23	+1.2
867,736	-		PP_0750	0.47	-1.3
867,773	-		PP_0750	0.59	-0.9
867,773	-		PP_0750	0.59	-1.1
867,871	-				-1.0
867,871	-				+0.7
867,871	-				-0.2
867,871	-				+0.1
867,887	+				+1.0
867,887	+				+0.4
867,888	-				-0.0
867,888	-				-1.3
868,014	+				-0.9
868,080	+				-0.6
868,080	+				+0.6
868,087	-				-0.1
869,608	-				-0.0
869,608	-				+0.9
869,618	-				+1.0
869,618	-				+2.0
869,618	-				-1.0
869,618	-				-0.3
869,618	-				-1.5
869,618	-				+0.8
869,630	-				+1.9
869,630	-				+0.3
869,630	-				+1.2
869,630	-				-1.9
869,630	-				+0.6
869,630	-				-0.3
869,630	-				-1.5
869,758	-				+0.3
869,805	-				-1.0
870,117	-				+0.2
870,117	-				-0.4
870,119	-				-0.5
870,134	-				-0.4
870,134	-				-0.4
870,136	-				-0.4
870,136	-				-0.9
870,136	-				-0.2
870,136	-				-0.9
870,176	-				+0.8
870,374	-		PP_5456	0.79	-0.7
870,374	-		PP_5456	0.79	-0.0
870,461	-				-1.1
870,524	+				+1.7
870,524	+				+0.3
870,528	+				+1.2
870,528	+				-0.0
870,528	+				-0.3
870,528	+				-1.6
870,528	+				+0.5
870,528	+				+1.3
870,528	+				+0.8
870,528	+				-1.1
870,529	-				+0.8
870,529	-				+1.6
870,529	-				-1.6
870,529	-				+1.2
870,529	-				+1.0
870,529	-				-0.4
870,529	-				+0.6
870,529	-				-0.6
870,530	+				-1.1
870,530	+				+1.3
870,530	+				-0.4
870,531	-				+0.7
870,531	-				-0.4
870,531	-				-0.9
870,531	-				-1.3
870,531	-				-0.5
870,531	-				+1.0
870,531	-				-0.8
870,531	-				-0.2
870,531	-				-0.1
870,531	-				-1.1
870,531	-				-1.3
870,531	-				-1.1
870,531	-				-1.8
870,531	-				+1.4