Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0734 and PP_0735 overlap by 7 nucleotides PP_0735 and PP_0736 overlap by 8 nucleotides PP_0736 and PP_0737 are separated by 104 nucleotides PP_0737 and PP_0738 are separated by 115 nucleotides
PP_0734: PP_0734 - release factor-(glutamine-N5) methyltransferase, at 853,578 to 854,408
_0734
PP_0735: PP_0735 - molybdopterin-synthase adenylyltransferase, at 854,402 to 855,157
_0735
PP_0736: PP_0736 - Glutamate racemase, at 855,150 to 855,947
_0736
PP_0737: PP_0737 - lipid A 3-O-deacylase, at 856,052 to 856,570
_0737
PP_0738: PP_0738 - conserved protein of unknown function, at 856,686 to 857,384
_0738
Position (kb) 855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 854.903 kb on + strand, within PP_0735 at 854.903 kb on + strand, within PP_0735 at 854.915 kb on + strand at 855.142 kb on + strand at 855.142 kb on + strand at 855.566 kb on - strand, within PP_0736 at 855.915 kb on - strand at 855.915 kb on - strand at 855.915 kb on - strand at 855.915 kb on - strand at 855.972 kb on + strand at 855.973 kb on - strand at 855.994 kb on - strand at 855.994 kb on - strand at 856.023 kb on + strand at 856.024 kb on - strand at 856.024 kb on - strand at 856.024 kb on - strand at 856.052 kb on - strand at 856.253 kb on + strand, within PP_0737 at 856.253 kb on + strand, within PP_0737 at 856.254 kb on - strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.259 kb on + strand, within PP_0737 at 856.341 kb on + strand, within PP_0737 at 856.350 kb on - strand, within PP_0737 at 856.350 kb on - strand, within PP_0737 at 856.533 kb on + strand at 856.533 kb on + strand at 856.534 kb on - strand at 856.534 kb on - strand at 856.553 kb on + strand at 856.554 kb on - strand at 856.611 kb on + strand at 856.612 kb on - strand at 856.622 kb on + strand at 856.623 kb on - strand at 856.623 kb on - strand at 856.634 kb on + strand at 856.635 kb on - strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.669 kb on - strand at 856.669 kb on - strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.713 kb on - strand at 856.852 kb on - strand, within PP_0738 at 856.889 kb on + strand, within PP_0738
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 854,903 + PP_0735 0.66 +0.3 854,903 + PP_0735 0.66 -2.9 854,915 + -0.0 855,142 + +0.7 855,142 + +0.2 855,566 - PP_0736 0.52 +4.8 855,915 - +0.5 855,915 - -0.2 855,915 - +0.4 855,915 - +0.3 855,972 + +1.2 855,973 - +0.2 855,994 - +0.9 855,994 - +1.3 856,023 + -1.1 856,024 - +0.5 856,024 - +1.3 856,024 - +0.9 856,052 - -0.5 856,253 + PP_0737 0.39 +0.8 856,253 + PP_0737 0.39 -0.1 856,254 - PP_0737 0.39 +0.7 856,259 + PP_0737 0.40 -0.2 856,259 + PP_0737 0.40 +0.4 856,259 + PP_0737 0.40 +2.2 856,341 + PP_0737 0.56 +0.3 856,350 - PP_0737 0.57 -0.9 856,350 - PP_0737 0.57 +1.2 856,533 + -0.4 856,533 + -0.1 856,534 - -0.5 856,534 - -0.7 856,553 + -2.9 856,554 - -0.9 856,611 + +0.8 856,612 - -1.1 856,622 + +1.1 856,623 - +0.5 856,623 - +0.8 856,634 + -0.8 856,635 - +0.0 856,668 + +1.0 856,668 + -1.2 856,668 + +0.5 856,668 + -0.3 856,669 - +1.3 856,669 - -1.0 856,709 + -0.2 856,709 + -0.4 856,709 + -2.1 856,710 - -0.2 856,710 - +1.6 856,710 - +1.9 856,712 + +0.3 856,712 + +0.9 856,712 + +0.4 856,712 + -0.0 856,712 + +0.5 856,712 + -1.0 856,713 - +0.4 856,852 - PP_0738 0.24 -1.3 856,889 + PP_0738 0.29 -1.2
Or see this region's nucleotide sequence