Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0623 and PP_0624 overlap by 4 nucleotides PP_0624 and PP_0625 are separated by 249 nucleotides
PP_0623: PP_0623 - 23S rRNA pseudouridine(1911,1915,1917) synthase, at 728,512 to 729,474
_0623
PP_0624: PP_0624 - Uncharacterized protein YfiH, at 729,471 to 730,211
_0624
PP_0625: PP_0625 - Chaperone protein ClpB, at 730,461 to 733,025
_0625
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 728.771 kb on - strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.266 kb on - strand, within PP_0623 at 729.283 kb on - strand, within PP_0623 at 730.056 kb on - strand, within PP_0624 at 730.056 kb on - strand, within PP_0624 at 730.057 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.108 kb on - strand, within PP_0624 at 730.152 kb on + strand at 730.152 kb on + strand at 730.210 kb on - strand at 730.280 kb on + strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.377 kb on + strand at 730.377 kb on + strand at 730.378 kb on - strand at 730.378 kb on - strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.383 kb on + strand at 730.383 kb on + strand at 730.384 kb on - strand at 730.408 kb on + strand at 730.408 kb on + strand at 730.446 kb on - strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.468 kb on + strand at 730.477 kb on + strand at 730.681 kb on + strand at 730.950 kb on + strand, within PP_0625 at 730.950 kb on + strand, within PP_0625 at 730.951 kb on - strand, within PP_0625 at 730.951 kb on - strand, within PP_0625 at 731.194 kb on + strand, within PP_0625 at 731.195 kb on - strand, within PP_0625 at 731.195 kb on - strand, within PP_0625 at 731.211 kb on + strand, within PP_0625
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 728,771 - PP_0623 0.27 -1.3 729,019 + PP_0623 0.53 -2.3 729,019 + PP_0623 0.53 -0.2 729,266 - PP_0623 0.78 -0.9 729,283 - PP_0623 0.80 -0.4 730,056 - PP_0624 0.79 +0.2 730,056 - PP_0624 0.79 -0.5 730,057 + PP_0624 0.79 +1.0 730,059 + PP_0624 0.79 -0.5 730,059 + PP_0624 0.79 +1.0 730,059 + PP_0624 0.79 -0.2 730,059 + PP_0624 0.79 -0.5 730,059 + PP_0624 0.79 +0.4 730,060 - PP_0624 0.79 +0.1 730,060 - PP_0624 0.79 +0.6 730,060 - PP_0624 0.79 -0.5 730,060 - PP_0624 0.79 +0.3 730,060 - PP_0624 0.79 +3.0 730,108 - PP_0624 0.86 +0.1 730,152 + -0.9 730,152 + +2.3 730,210 - +1.3 730,280 + -0.8 730,281 - +0.7 730,281 - +0.6 730,281 - -0.3 730,377 + -1.1 730,377 + +0.7 730,378 - -0.4 730,378 - -1.0 730,381 + -2.1 730,381 + +0.5 730,381 + +0.9 730,382 - +0.3 730,382 - -0.1 730,382 - -0.0 730,383 + +0.3 730,383 + -2.1 730,384 - -0.2 730,408 + -0.2 730,408 + -1.0 730,446 - +0.0 730,455 + +2.0 730,455 + -0.3 730,455 + +0.8 730,455 + +1.0 730,455 + +0.5 730,456 - +0.6 730,456 - +0.3 730,456 - -0.4 730,456 - +1.5 730,456 - -2.7 730,456 - -0.9 730,456 - -0.1 730,456 - -2.4 730,468 + -1.6 730,477 + +0.4 730,681 + +2.5 730,950 + PP_0625 0.19 -0.8 730,950 + PP_0625 0.19 -0.5 730,951 - PP_0625 0.19 -0.5 730,951 - PP_0625 0.19 -0.6 731,194 + PP_0625 0.29 -1.3 731,195 - PP_0625 0.29 -1.4 731,195 - PP_0625 0.29 -1.4 731,211 + PP_0625 0.29 +0.7
Or see this region's nucleotide sequence