Strain Fitness in Pseudomonas putida KT2440 around PP_0602

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0601 and PP_0602 are separated by 118 nucleotidesPP_0602 and PP_0603 overlap by 4 nucleotides PP_0601: PP_0601 - lipid II flippase, at 707,599 to 709,137 _0601 PP_0602: PP_0602 - bifunctional riboflavin kinase / FMN adenylyltransferaseFMN adenylyltransferase, at 709,256 to 710,206 _0602 PP_0603: PP_0603 - Isoleucine--tRNA ligase, at 710,203 to 713,034 _0603 Position (kb) 709 710 711Strain fitness (log2 ratio) -1 0 1at 709.224 kb on + strandat 709.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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709,224 + +0.4
709,224 + -0.7

Or see this region's nucleotide sequence