Strain Fitness in Pseudomonas putida KT2440 around PP_0579

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0577 and PP_0578 overlap by 38 nucleotidesPP_0578 and PP_0579 overlap by 4 nucleotidesPP_0579 and PP_0580 overlap by 16 nucleotidesPP_0580 and PP_0581 are separated by 2 nucleotides PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698 _0577 PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410 _0578 PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805 _0579 PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641 _0580 PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017 _0581 Position (kb) 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 675.499 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.631 kb on + strandat 675.631 kb on + strandat 675.640 kb on + strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 676.358 kb on + strandat 676.358 kb on + strandat 676.359 kb on - strandat 676.359 kb on - strandat 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.816 kb on + strandat 676.816 kb on + strandat 676.816 kb on + strandat 676.817 kb on - strandat 676.817 kb on - strandat 676.935 kb on + strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 677.054 kb on - strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.062 kb on - strand, within PP_0580at 677.082 kb on + strand, within PP_0580at 677.363 kb on + strand, within PP_0580at 677.364 kb on - strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.442 kb on + strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.443 kb on - strand, within PP_0580at 677.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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675,499 + PP_0577 0.71 +0.6
675,499 + PP_0577 0.71 +0.7
675,569 - PP_0577 0.81 +2.3
675,569 - PP_0577 0.81 -1.4
675,569 - PP_0577 0.81 +0.2
675,569 - PP_0577 0.81 +0.7
675,569 - PP_0577 0.81 +0.5
675,631 + -0.4
675,631 + +1.4
675,640 + -0.8
675,641 - -0.4
675,641 - +1.4
675,641 - -0.3
675,641 - -2.5
675,641 - +0.2
675,641 - +0.7
675,786 + PP_0578 0.17 +2.0
675,786 + PP_0578 0.17 +0.0
675,786 + PP_0578 0.17 +0.7
675,786 + PP_0578 0.17 -1.2
675,786 + PP_0578 0.17 +0.0
675,786 + PP_0578 0.17 -1.0
675,786 + PP_0578 0.17 +0.8
675,787 - PP_0578 0.17 -3.1
675,787 - PP_0578 0.17 +1.2
675,787 - PP_0578 0.17 -0.7
675,788 + PP_0578 0.17 +1.2
675,788 + PP_0578 0.17 -1.4
675,788 + PP_0578 0.17 -0.8
675,788 + PP_0578 0.17 +0.8
675,789 - PP_0578 0.17 -1.5
675,789 - PP_0578 0.17 +1.3
675,834 + PP_0578 0.23 -0.1
675,834 + PP_0578 0.23 +1.7
675,834 + PP_0578 0.23 +0.4
675,835 - PP_0578 0.23 -1.4
675,835 - PP_0578 0.23 -0.8
675,835 - PP_0578 0.23 -1.8
675,977 + PP_0578 0.42 +0.9
675,977 + PP_0578 0.42 +0.0
676,358 + +1.0
676,358 + +1.8
676,359 - -0.4
676,359 - +0.3
676,498 + PP_0579 0.23 -0.5
676,498 + PP_0579 0.23 -0.1
676,498 + PP_0579 0.23 -0.9
676,724 + PP_0579 0.79 -2.3
676,724 + PP_0579 0.79 -0.5
676,724 + PP_0579 0.79 -0.5
676,724 + PP_0579 0.79 -2.1
676,734 + PP_0579 0.82 +1.7
676,734 + PP_0579 0.82 -0.8
676,734 + PP_0579 0.82 +0.2
676,734 + PP_0579 0.82 -1.1
676,734 + PP_0579 0.82 -3.4
676,735 - PP_0579 0.82 -1.0
676,735 - PP_0579 0.82 -1.1
676,735 - PP_0579 0.82 -0.0
676,816 + +1.0
676,816 + -2.2
676,816 + +0.7
676,817 - -2.3
676,817 - +1.6
676,935 + PP_0580 0.17 -0.4
676,936 - PP_0580 0.17 -0.6
676,936 - PP_0580 0.17 -0.4
677,054 - PP_0580 0.31 -2.6
677,061 + PP_0580 0.32 +0.5
677,061 + PP_0580 0.32 -0.6
677,062 - PP_0580 0.32 -1.4
677,082 + PP_0580 0.34 +0.8
677,363 + PP_0580 0.67 -0.5
677,364 - PP_0580 0.67 +1.3
677,442 + PP_0580 0.77 +2.0
677,442 + PP_0580 0.77 -0.0
677,442 + PP_0580 0.77 +1.1
677,442 + PP_0580 0.77 +0.1
677,443 - PP_0580 0.77 -0.3
677,443 - PP_0580 0.77 +0.0
677,443 - PP_0580 0.77 -0.5
677,443 - PP_0580 0.77 -0.8
677,443 - PP_0580 0.77 +0.9
677,589 + +0.9

Or see this region's nucleotide sequence