Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0484 and PP_0485 are separated by 9 nucleotides PP_0485 and PP_0486 are separated by 90 nucleotides
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
PP_0485: PP_0485 - Single-stranded DNA-binding protein, at 571,029 to 571,574
_0485
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.393 kb on + strand, within PP_0484 at 570.394 kb on - strand at 570.394 kb on - strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.514 kb on + strand, within PP_0484 at 570.515 kb on - strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.663 kb on + strand, within PP_0484 at 570.773 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.936 kb on + strand at 570.936 kb on + strand at 570.938 kb on + strand at 571.669 kb on + strand at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.921 kb on + strand, within PP_0486 at 571.922 kb on - strand, within PP_0486 at 571.979 kb on + strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.080 kb on - strand, within PP_0486 at 572.107 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.454 kb on + strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.557 kb on - strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.560 kb on - strand, within PP_0486
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 570,393 + PP_0484 0.55 -0.4 570,394 - -0.5 570,394 - PP_0484 0.55 -1.5 570,444 + PP_0484 0.59 -1.4 570,444 + PP_0484 0.59 -2.3 570,444 + PP_0484 0.59 -3.0 570,445 - PP_0484 0.59 -3.1 570,445 - PP_0484 0.59 -0.4 570,445 - PP_0484 0.59 -2.7 570,514 + PP_0484 0.64 -2.6 570,515 - PP_0484 0.64 -0.6 570,516 + PP_0484 0.64 -0.9 570,516 + PP_0484 0.64 -2.4 570,516 + PP_0484 0.64 -2.0 570,663 + PP_0484 0.74 +1.1 570,773 + PP_0484 0.82 -2.4 570,813 + PP_0484 0.85 -3.7 570,813 + PP_0484 0.85 -0.8 570,813 + PP_0484 0.85 -0.3 570,936 + -2.4 570,936 + -2.2 570,938 + -1.8 571,669 + +0.4 571,890 - PP_0486 0.16 -0.6 571,890 - PP_0486 0.16 -0.5 571,890 - PP_0486 0.16 -1.5 571,921 + PP_0486 0.18 +1.6 571,922 - PP_0486 0.18 +0.2 571,979 + PP_0486 0.22 +0.3 572,068 - PP_0486 0.28 +1.2 572,068 - PP_0486 0.28 +0.2 572,080 - PP_0486 0.29 -0.6 572,107 + PP_0486 0.31 -1.2 572,161 + PP_0486 0.35 -0.7 572,161 + PP_0486 0.35 -1.2 572,161 + PP_0486 0.35 -0.4 572,162 - PP_0486 0.35 -0.1 572,162 - PP_0486 0.35 -1.1 572,162 - PP_0486 0.35 +1.1 572,162 - PP_0486 0.35 +0.1 572,162 - PP_0486 0.35 +2.1 572,162 - PP_0486 0.35 -1.1 572,163 + PP_0486 0.35 -0.8 572,163 + PP_0486 0.35 -0.5 572,163 + PP_0486 0.35 +0.2 572,164 - PP_0486 0.35 -0.5 572,164 - PP_0486 0.35 -3.3 572,182 + PP_0486 0.36 -1.0 572,182 + PP_0486 0.36 +0.5 572,200 + PP_0486 0.38 -0.3 572,200 + PP_0486 0.38 +0.3 572,227 + PP_0486 0.39 -1.9 572,227 + PP_0486 0.39 -0.1 572,231 + PP_0486 0.40 -0.3 572,231 + PP_0486 0.40 +0.3 572,231 + PP_0486 0.40 +0.2 572,232 - PP_0486 0.40 +0.1 572,232 - PP_0486 0.40 -1.0 572,232 - PP_0486 0.40 -0.7 572,232 - PP_0486 0.40 -1.9 572,454 + PP_0486 0.55 -1.1 572,455 - PP_0486 0.55 +0.8 572,455 - PP_0486 0.55 +1.2 572,455 - PP_0486 0.55 +1.1 572,556 + PP_0486 0.63 -0.6 572,556 + PP_0486 0.63 +1.2 572,556 + PP_0486 0.63 -1.3 572,557 - PP_0486 0.63 +1.3 572,559 + PP_0486 0.63 -2.4 572,559 + PP_0486 0.63 +0.4 572,560 - PP_0486 0.63 -0.5 572,560 - PP_0486 0.63 -0.7
Or see this region's nucleotide sequence