Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0481 and PP_0482 are separated by 163 nucleotides PP_0482 and PP_0483 are separated by 72 nucleotides
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588
_0482
PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495
_0483
Position (kb) 566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 565.220 kb on - strand, within PP_0481 at 565.232 kb on + strand, within PP_0481 at 565.427 kb on + strand, within PP_0481 at 565.468 kb on + strand, within PP_0481 at 565.468 kb on + strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.518 kb on + strand, within PP_0481 at 565.519 kb on - strand, within PP_0481 at 565.526 kb on + strand, within PP_0481 at 565.607 kb on + strand, within PP_0481 at 565.607 kb on + strand, within PP_0481 at 565.608 kb on - strand, within PP_0481 at 565.640 kb on + strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.645 kb on + strand, within PP_0481 at 565.673 kb on + strand, within PP_0481 at 565.762 kb on + strand, within PP_0481 at 565.769 kb on + strand, within PP_0481 at 565.770 kb on - strand, within PP_0481 at 565.834 kb on + strand at 565.834 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.892 kb on + strand at 565.892 kb on + strand at 565.893 kb on - strand at 565.917 kb on - strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.066 kb on - strand at 566.066 kb on - strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.087 kb on - strand at 566.095 kb on + strand at 566.095 kb on + strand at 566.096 kb on - strand at 566.143 kb on + strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.151 kb on + strand at 566.151 kb on + strand at 566.152 kb on - strand at 566.152 kb on - strand at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.217 kb on + strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.244 kb on + strand, within PP_0482 at 566.360 kb on + strand, within PP_0482 at 566.361 kb on - strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.517 kb on + strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.607 kb on + strand at 566.630 kb on - strand at 566.659 kb on - strand at 567.220 kb on + strand, within PP_0483
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 565,220 - PP_0481 0.49 +0.6 565,232 + PP_0481 0.49 -1.6 565,427 + PP_0481 0.63 +0.6 565,468 + PP_0481 0.66 +0.4 565,468 + PP_0481 0.66 -1.3 565,469 - PP_0481 0.66 -0.1 565,469 - PP_0481 0.66 +0.7 565,469 - PP_0481 0.66 +0.2 565,518 + PP_0481 0.69 -0.6 565,519 - PP_0481 0.69 -1.2 565,526 + PP_0481 0.70 +1.7 565,607 + PP_0481 0.75 -0.2 565,607 + PP_0481 0.75 +0.0 565,608 - PP_0481 0.75 -0.8 565,640 + PP_0481 0.78 +1.1 565,641 - PP_0481 0.78 -1.1 565,641 - PP_0481 0.78 -0.3 565,641 - PP_0481 0.78 -2.1 565,641 - PP_0481 0.78 -0.5 565,645 + PP_0481 0.78 -0.4 565,673 + PP_0481 0.80 +1.4 565,762 + PP_0481 0.86 +0.6 565,769 + PP_0481 0.87 -0.9 565,770 - PP_0481 0.87 -0.9 565,834 + -0.7 565,834 + -0.2 565,887 + +1.0 565,887 + -1.8 565,887 + +0.4 565,892 + +1.1 565,892 + -2.6 565,893 - -0.1 565,917 - -0.7 566,010 + -0.1 566,011 - -1.2 566,066 - +0.7 566,066 - -2.3 566,086 + +0.9 566,086 + -0.2 566,086 + -0.3 566,086 + +1.6 566,087 - -1.5 566,095 + -1.6 566,095 + +2.1 566,096 - -1.9 566,143 + -2.7 566,144 - -1.8 566,144 - -2.5 566,144 - -2.8 566,144 - -1.0 566,151 + -3.8 566,151 + -1.2 566,152 - -1.5 566,152 - -2.3 566,196 + PP_0482 0.15 -1.3 566,196 + PP_0482 0.15 -1.5 566,196 + PP_0482 0.15 -2.5 566,217 + PP_0482 0.20 -1.8 566,218 - PP_0482 0.20 -0.1 566,218 - PP_0482 0.20 -2.0 566,244 + PP_0482 0.26 -1.3 566,360 + PP_0482 0.51 -2.4 566,361 - PP_0482 0.51 -2.9 566,403 + PP_0482 0.60 -0.5 566,403 + PP_0482 0.60 -2.2 566,404 - PP_0482 0.60 -0.5 566,404 - PP_0482 0.60 -1.8 566,460 + PP_0482 0.72 -3.2 566,460 + PP_0482 0.72 -2.6 566,460 + PP_0482 0.72 -2.0 566,460 + PP_0482 0.72 -1.8 566,460 + PP_0482 0.72 -1.1 566,461 - PP_0482 0.72 -3.3 566,461 - PP_0482 0.72 -1.0 566,461 - PP_0482 0.72 -2.5 566,517 + PP_0482 0.85 -2.6 566,518 - PP_0482 0.85 +0.4 566,518 - PP_0482 0.85 -2.5 566,586 + -1.4 566,586 + +1.6 566,586 + -1.1 566,586 + +0.3 566,587 - -1.6 566,587 - +1.1 566,587 - -1.0 566,587 - +1.0 566,587 - -2.2 566,587 - -0.1 566,607 + +0.0 566,630 - +0.0 566,659 - -2.9 567,220 + PP_0483 0.20 -0.9
Or see this region's nucleotide sequence