Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0337 and PP_0338 are separated by 307 nucleotides PP_0338 and PP_0339 are separated by 13 nucleotides
PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056
_0337
PP_0338: PP_0338 - AceF-S-acetyldihydrolipoate, at 406,364 to 408,004
_0338
PP_0339: PP_0339 - Pyruvate dehydrogenase E1 component, at 408,018 to 410,663
_0339
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.434 kb on + strand, within PP_0337 at 405.497 kb on + strand, within PP_0337 at 405.522 kb on + strand, within PP_0337 at 405.523 kb on - strand, within PP_0337 at 405.716 kb on + strand, within PP_0337 at 405.716 kb on + strand, within PP_0337 at 405.717 kb on - strand, within PP_0337 at 405.770 kb on + strand, within PP_0337 at 405.771 kb on - strand, within PP_0337 at 405.783 kb on - strand, within PP_0337 at 405.783 kb on - strand, within PP_0337 at 405.831 kb on - strand at 405.932 kb on + strand at 405.933 kb on - strand at 406.001 kb on - strand at 406.001 kb on - strand at 406.305 kb on + strand at 406.305 kb on + strand at 406.365 kb on + strand at 406.779 kb on + strand, within PP_0338 at 406.779 kb on + strand, within PP_0338 at 407.163 kb on + strand, within PP_0338 at 408.006 kb on + strand at 408.069 kb on - strand at 408.271 kb on + strand at 408.507 kb on + strand, within PP_0339 at 408.547 kb on + strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.628 kb on + strand at 408.701 kb on - strand, within PP_0339 at 408.712 kb on + strand, within PP_0339 at 408.713 kb on - strand, within PP_0339 at 408.867 kb on - strand, within PP_0339 at 408.931 kb on + strand, within PP_0339 at 408.932 kb on - strand, within PP_0339 at 408.932 kb on - strand, within PP_0339
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 405,434 + PP_0337 0.77 +0.3 405,497 + PP_0337 0.79 +0.6 405,522 + PP_0337 0.80 +2.0 405,523 - PP_0337 0.80 +0.1 405,716 + PP_0337 0.87 +1.0 405,716 + PP_0337 0.87 -0.3 405,717 - PP_0337 0.87 +0.0 405,770 + PP_0337 0.89 +0.3 405,771 - PP_0337 0.89 -1.2 405,783 - PP_0337 0.90 -0.3 405,783 - PP_0337 0.90 +2.5 405,831 - +1.1 405,932 + -2.3 405,933 - +1.4 406,001 - -0.4 406,001 - +0.6 406,305 + +0.5 406,305 + -0.5 406,365 + +0.9 406,779 + PP_0338 0.25 +0.4 406,779 + PP_0338 0.25 +2.3 407,163 + PP_0338 0.49 +1.9 408,006 + -2.0 408,069 - +0.9 408,271 + +1.9 408,507 + PP_0339 0.18 +0.4 408,547 + PP_0339 0.20 +1.9 408,626 - PP_0339 0.23 -2.0 408,626 - PP_0339 0.23 +1.9 408,628 + +0.4 408,701 - PP_0339 0.26 +0.4 408,712 + PP_0339 0.26 +0.4 408,713 - PP_0339 0.26 -2.7 408,867 - PP_0339 0.32 +0.5 408,931 + PP_0339 0.35 +1.9 408,932 - PP_0339 0.35 +1.9 408,932 - PP_0339 0.35 -0.6
Or see this region's nucleotide sequence