Strain Fitness in Pseudomonas putida KT2440 around PP_0269

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0268 and PP_0269 are separated by 30 nucleotidesPP_0269 and PP_0270 are separated by 149 nucleotides PP_0268: PP_0268 - outer-membrane porin D, at 324,715 to 326,034 _0268 PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732 _0269 PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249 _0270 Position (kb) 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 325.135 kb on + strand, within PP_0268at 325.136 kb on - strand, within PP_0268at 325.328 kb on + strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.329 kb on - strand, within PP_0268at 325.340 kb on - strand, within PP_0268at 325.408 kb on + strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.409 kb on - strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.423 kb on + strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.424 kb on - strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.498 kb on + strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.499 kb on - strand, within PP_0268at 325.502 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.558 kb on + strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.559 kb on - strand, within PP_0268at 325.565 kb on - strand, within PP_0268at 325.618 kb on + strand, within PP_0268at 325.619 kb on - strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.624 kb on + strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.625 kb on - strand, within PP_0268at 325.634 kb on - strand, within PP_0268at 325.676 kb on - strand, within PP_0268at 325.690 kb on + strand, within PP_0268at 325.691 kb on - strand, within PP_0268at 325.759 kb on + strand, within PP_0268at 325.760 kb on - strand, within PP_0268at 325.780 kb on + strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.781 kb on - strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.792 kb on + strand, within PP_0268at 325.793 kb on - strand, within PP_0268at 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.932 kb on + strandat 325.933 kb on - strandat 325.975 kb on + strandat 326.048 kb on + strandat 326.049 kb on - strandat 326.066 kb on + strandat 326.067 kb on - strandat 326.122 kb on + strandat 326.123 kb on - strandat 326.174 kb on + strandat 326.203 kb on + strandat 326.204 kb on - strandat 326.472 kb on + strand, within PP_0269at 326.473 kb on - strand, within PP_0269at 326.533 kb on + strand, within PP_0269at 326.533 kb on + strand, within PP_0269at 327.089 kb on + strand, within PP_0269at 327.270 kb on - strand, within PP_0269at 327.431 kb on + strand, within PP_0269at 327.492 kb on - strand, within PP_0269at 327.534 kb on + strand, within PP_0269at 327.535 kb on - strand, within PP_0269at 327.694 kb on + strandat 327.695 kb on - strandat 327.763 kb on - strandat 327.763 kb on - strandat 327.767 kb on + strandat 327.767 kb on + strandat 327.797 kb on + strandat 327.815 kb on + strandat 327.815 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.936 kb on + strandat 327.937 kb on - strandat 327.937 kb on - strandat 328.150 kb on + strand, within PP_0270at 328.358 kb on + strandat 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.699 kb on + strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.715 kb on - strand, within PP_0270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
325,135 + PP_0268 0.32 -0.9
325,136 - PP_0268 0.32 -2.6
325,328 + PP_0268 0.46 -0.6
325,329 - PP_0268 0.47 +0.5
325,329 - PP_0268 0.47 +0.2
325,329 - PP_0268 0.47 -0.4
325,329 - PP_0268 0.47 -2.8
325,329 - PP_0268 0.47 -0.3
325,340 - PP_0268 0.47 -1.1
325,408 + PP_0268 0.53 +0.0
325,409 - PP_0268 0.53 +1.3
325,409 - PP_0268 0.53 +0.4
325,423 + PP_0268 0.54 -2.0
325,423 + PP_0268 0.54 -1.1
325,423 + PP_0268 0.54 +1.2
325,423 + PP_0268 0.54 -0.9
325,423 + PP_0268 0.54 +0.6
325,424 - PP_0268 0.54 +1.8
325,424 - PP_0268 0.54 -1.0
325,498 + PP_0268 0.59 +0.4
325,498 + PP_0268 0.59 +0.5
325,498 + PP_0268 0.59 +0.3
325,498 + PP_0268 0.59 +0.4
325,499 - PP_0268 0.59 +0.0
325,499 - PP_0268 0.59 +0.2
325,502 + PP_0268 0.60 +0.8
325,558 + PP_0268 0.64 +0.0
325,558 + PP_0268 0.64 +0.5
325,559 - PP_0268 0.64 -0.2
325,559 - PP_0268 0.64 -0.3
325,559 - PP_0268 0.64 -0.4
325,559 - PP_0268 0.64 -0.6
325,559 - PP_0268 0.64 +0.8
325,559 - PP_0268 0.64 +1.3
325,565 - PP_0268 0.64 -1.0
325,618 + PP_0268 0.68 -0.2
325,619 - PP_0268 0.68 +1.7
325,624 + PP_0268 0.69 -0.8
325,624 + PP_0268 0.69 +1.9
325,624 + PP_0268 0.69 +0.6
325,624 + PP_0268 0.69 +2.8
325,625 - PP_0268 0.69 +1.5
325,625 - PP_0268 0.69 -1.1
325,634 - PP_0268 0.70 +2.6
325,676 - PP_0268 0.73 +0.2
325,690 + PP_0268 0.74 +1.8
325,691 - PP_0268 0.74 -0.3
325,759 + PP_0268 0.79 +1.6
325,760 - PP_0268 0.79 -0.3
325,780 + PP_0268 0.81 +3.4
325,781 - PP_0268 0.81 -0.9
325,781 - PP_0268 0.81 -0.1
325,781 - PP_0268 0.81 -0.8
325,792 + PP_0268 0.82 -1.3
325,792 + PP_0268 0.82 -1.6
325,792 + PP_0268 0.82 -0.2
325,792 + PP_0268 0.82 +0.6
325,793 - PP_0268 0.82 +1.0
325,932 + +0.4
325,932 + -1.4
325,932 + -0.2
325,932 + +0.4
325,932 + +0.3
325,932 + -1.0
325,933 - +0.9
325,975 + -1.0
326,048 + +0.4
326,049 - +0.5
326,066 + -0.1
326,067 - +0.7
326,122 + -0.2
326,123 - +0.5
326,174 + -1.1
326,203 + -1.0
326,204 - -1.2
326,472 + PP_0269 0.24 -1.8
326,473 - PP_0269 0.24 -1.3
326,533 + PP_0269 0.28 -0.1
326,533 + PP_0269 0.28 +1.3
327,089 + PP_0269 0.61 -0.0
327,270 - PP_0269 0.72 -1.7
327,431 + PP_0269 0.82 -1.2
327,492 - PP_0269 0.86 -1.2
327,534 + PP_0269 0.88 +1.5
327,535 - PP_0269 0.88 -1.0
327,694 + +0.2
327,695 - -1.2
327,763 - -0.4
327,763 - -0.0
327,767 + -1.4
327,767 + -2.2
327,797 + +0.0
327,815 + -0.8
327,815 + +0.8
327,849 + -0.3
327,849 + +0.3
327,849 + -0.2
327,849 + -0.7
327,849 + +0.8
327,850 - +0.2
327,850 - +0.7
327,850 - +0.9
327,850 - +0.3
327,897 + +2.6
327,897 + +0.2
327,897 + +0.4
327,898 - -0.4
327,898 - -1.5
327,898 - -1.4
327,898 - -0.2
327,898 - -0.0
327,936 + +0.0
327,937 - +1.0
327,937 - +0.8
328,150 + PP_0270 0.20 -1.1
328,358 + -0.7
328,358 + PP_0270 0.35 -2.4
328,358 + PP_0270 0.35 -1.1
328,358 + PP_0270 0.35 -0.6
328,358 + PP_0270 0.35 -1.3
328,358 + PP_0270 0.35 -0.4
328,358 + PP_0270 0.35 +1.6
328,358 + PP_0270 0.35 +1.3
328,359 - PP_0270 0.35 -0.5
328,359 - PP_0270 0.35 -3.0
328,359 - PP_0270 0.35 +0.2
328,359 - PP_0270 0.35 +0.4
328,483 + PP_0270 0.44 -0.4
328,483 + PP_0270 0.44 +1.5
328,484 - PP_0270 0.44 -0.5
328,484 - PP_0270 0.44 +0.2
328,699 + PP_0270 0.60 +0.3
328,700 - PP_0270 0.60 -1.0
328,700 - PP_0270 0.60 -0.8
328,715 - PP_0270 0.61 +0.2

Or see this region's nucleotide sequence