Strain Fitness in Pseudomonas putida KT2440 around PP_0187

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
239,685	+				-0.0
239,685	+				-0.1
239,685	+				+1.9
239,685	+				-0.7
239,685	+				-0.7
239,686	-				-0.4
239,693	+				-1.7
239,694	-				-1.1
239,694	-				-0.3
239,730	+				+0.2
239,730	+				-1.4
239,731	-				-3.5
239,731	-				-1.6
239,731	-				-1.1
239,762	+				-1.5
239,763	-				-3.1
239,763	-				-2.4
239,763	-				-1.7
239,872	+		PP_0188	0.15	-3.3
239,872	+		PP_0188	0.15	-2.5
239,873	-		PP_0188	0.15	-1.2
240,028	+		PP_0188	0.29	-1.6
240,161	+		PP_0188	0.40	-2.9
240,323	+		PP_0188	0.55	-0.9
240,324	-		PP_0188	0.55	+0.3
240,365	-		PP_0188	0.58	-1.6
240,402	-		PP_0188	0.62	-1.4
240,475	+		PP_0188	0.68	-1.2
240,483	+		PP_0188	0.69	-1.1
240,484	-		PP_0188	0.69	-2.0
240,575	+		PP_0188	0.77	-1.8
240,576	-		PP_0188	0.77	-1.1
240,652	+		PP_0188	0.84	-3.3
240,653	-		PP_0188	0.84	-3.5