Strain Fitness in Pseudomonas putida KT2440 around PP_0159

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0158 and PP_0159 are separated by 13 nucleotidesPP_0159 and PP_16SA are separated by 569 nucleotides PP_0158: PP_0158 - glutaryl-CoA dehydrogenase, at 168,404 to 169,585 _0158 PP_0159: PP_0159 - putative CoA-transferase family III, at 169,599 to 170,819 _0159 PP_16SA: PP_16SA - 16S ribosomal RNA, at 171,389 to 172,910 _16SA Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.621 kb on - strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.651 kb on - strand, within PP_0158at 168.658 kb on + strand, within PP_0158at 168.773 kb on + strand, within PP_0158at 168.829 kb on + strand, within PP_0158at 168.830 kb on - strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.161 kb on - strand, within PP_0158at 169.165 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.221 kb on - strand, within PP_0158at 169.273 kb on - strand, within PP_0158at 169.273 kb on - strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.523 kb on - strandat 169.523 kb on - strandat 169.543 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.581 kb on - strandat 169.581 kb on - strandat 169.583 kb on + strandat 169.584 kb on - strandat 169.584 kb on - strandat 169.584 kb on - strandat 169.627 kb on + strandat 169.627 kb on + strandat 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.897 kb on + strand, within PP_0159at 169.898 kb on - strand, within PP_0159at 169.898 kb on - strand, within PP_0159at 169.929 kb on + strand, within PP_0159at 169.941 kb on + strand, within PP_0159at 169.942 kb on - strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.977 kb on + strandat 169.977 kb on + strandat 169.977 kb on + strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 170.032 kb on - strand, within PP_0159at 170.129 kb on + strand, within PP_0159at 170.151 kb on + strand, within PP_0159at 170.151 kb on + strand, within PP_0159at 170.152 kb on - strand, within PP_0159at 170.271 kb on + strand, within PP_0159at 170.272 kb on - strand, within PP_0159at 170.272 kb on - strand, within PP_0159at 170.318 kb on + strand, within PP_0159at 170.318 kb on + strand, within PP_0159at 170.318 kb on + strandat 170.318 kb on + strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.332 kb on - strand, within PP_0159at 170.378 kb on + strand, within PP_0159at 170.450 kb on + strand, within PP_0159at 170.488 kb on + strand, within PP_0159at 170.574 kb on - strand, within PP_0159at 170.741 kb on + strandat 170.788 kb on + strandat 170.789 kb on - strandat 170.789 kb on - strandat 170.817 kb on + strandat 170.878 kb on - strandat 170.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
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168,621 - PP_0158 0.18 -0.1
168,641 + PP_0158 0.20 -2.0
168,641 + PP_0158 0.20 -1.0
168,641 + PP_0158 0.20 -0.2
168,641 + PP_0158 0.20 +0.1
168,641 + PP_0158 0.20 -0.7
168,641 + PP_0158 0.20 +0.2
168,642 - PP_0158 0.20 -1.4
168,642 - PP_0158 0.20 -1.8
168,642 - PP_0158 0.20 -1.2
168,642 - PP_0158 0.20 -0.1
168,642 - PP_0158 0.20 -0.8
168,650 + PP_0158 0.21 -0.6
168,650 + PP_0158 0.21 -0.6
168,650 + PP_0158 0.21 +0.1
168,651 - PP_0158 0.21 -0.7
168,658 + PP_0158 0.21 -2.7
168,773 + PP_0158 0.31 +0.3
168,829 + PP_0158 0.36 -1.6
168,830 - PP_0158 0.36 +0.9
169,160 + PP_0158 0.64 -0.8
169,160 + PP_0158 0.64 -1.2
169,160 + PP_0158 0.64 +0.1
169,160 + PP_0158 0.64 -1.1
169,161 - PP_0158 0.64 -0.8
169,165 + PP_0158 0.64 -0.3
169,220 + PP_0158 0.69 +0.5
169,220 + PP_0158 0.69 -0.3
169,220 + PP_0158 0.69 -0.5
169,221 - PP_0158 0.69 -0.3
169,273 - PP_0158 0.74 +1.2
169,273 - PP_0158 0.74 +1.0
169,426 + PP_0158 0.86 -1.8
169,426 + PP_0158 0.86 +0.6
169,426 + PP_0158 0.86 -1.2
169,514 + +0.1
169,514 + +0.9
169,514 + +0.1
169,514 + +0.2
169,514 + -0.1
169,514 + -0.4
169,514 + -0.0
169,515 - -0.6
169,515 - +0.3
169,515 - +0.3
169,515 - -1.2
169,523 - -0.3
169,523 - +1.1
169,543 + -0.0
169,580 + -2.1
169,580 + +0.9
169,580 + +0.4
169,580 + -0.8
169,581 - -0.7
169,581 - +1.2
169,583 + +2.6
169,584 - -0.4
169,584 - -0.4
169,584 - -1.9
169,627 + -2.2
169,627 + -0.0
169,791 + PP_0159 0.16 +0.4
169,791 + PP_0159 0.16 +0.4
169,791 + PP_0159 0.16 +0.4
169,791 + PP_0159 0.16 -0.9
169,794 + PP_0159 0.16 +0.6
169,794 + PP_0159 0.16 -0.5
169,794 + PP_0159 0.16 -0.1
169,794 + PP_0159 0.16 +1.7
169,794 + PP_0159 0.16 +0.6
169,794 + PP_0159 0.16 -0.5
169,795 - PP_0159 0.16 -2.2
169,795 - PP_0159 0.16 -0.2
169,795 - PP_0159 0.16 -1.0
169,795 - PP_0159 0.16 -1.0
169,897 + PP_0159 0.24 -1.0
169,898 - PP_0159 0.24 -0.7
169,898 - PP_0159 0.24 +0.4
169,929 + PP_0159 0.27 +0.4
169,941 + PP_0159 0.28 -0.9
169,942 - PP_0159 0.28 -1.0
169,977 + PP_0159 0.31 +0.4
169,977 + PP_0159 0.31 -0.5
169,977 + +0.6
169,977 + +0.9
169,977 + PP_0159 0.31 -1.1
169,977 + PP_0159 0.31 +0.3
169,978 - PP_0159 0.31 -1.1
169,978 - PP_0159 0.31 +0.1
169,978 - PP_0159 0.31 -0.3
169,978 - PP_0159 0.31 -1.1
169,978 - PP_0159 0.31 -0.9
169,978 - PP_0159 0.31 +0.7
169,978 - PP_0159 0.31 -1.6
169,978 - PP_0159 0.31 -1.0
170,032 - PP_0159 0.35 -1.7
170,129 + PP_0159 0.43 -1.6
170,151 + PP_0159 0.45 +0.2
170,151 + PP_0159 0.45 -0.8
170,152 - PP_0159 0.45 -0.8
170,271 + PP_0159 0.55 +0.6
170,272 - PP_0159 0.55 -1.0
170,272 - PP_0159 0.55 -1.0
170,318 + PP_0159 0.59 -2.1
170,318 + PP_0159 0.59 +0.4
170,318 + -0.1
170,318 + PP_0159 0.59 -0.6
170,319 - PP_0159 0.59 -1.5
170,319 - PP_0159 0.59 -0.1
170,319 - PP_0159 0.59 -1.3
170,319 - PP_0159 0.59 -0.9
170,319 - PP_0159 0.59 +0.0
170,319 - PP_0159 0.59 +0.7
170,319 - PP_0159 0.59 -1.6
170,321 + PP_0159 0.59 -0.2
170,321 + PP_0159 0.59 +0.2
170,321 + PP_0159 0.59 -0.3
170,321 + PP_0159 0.59 -1.8
170,322 - PP_0159 0.59 +0.3
170,322 - PP_0159 0.59 -1.0
170,322 - PP_0159 0.59 -0.9
170,322 - PP_0159 0.59 -1.2
170,322 - PP_0159 0.59 -2.3
170,322 - PP_0159 0.59 -1.2
170,323 + PP_0159 0.59 -0.4
170,323 + PP_0159 0.59 -0.1
170,323 + PP_0159 0.59 +0.1
170,323 - PP_0159 0.59 +0.2
170,324 - PP_0159 0.59 +0.1
170,324 - PP_0159 0.59 +1.3
170,324 - PP_0159 0.59 -2.8
170,324 - PP_0159 0.59 +0.4
170,332 - PP_0159 0.60 -0.7
170,378 + PP_0159 0.64 +1.4
170,450 + PP_0159 0.70 +1.5
170,488 + PP_0159 0.73 -0.9
170,574 - PP_0159 0.80 -0.5
170,741 + -1.5
170,788 + +0.0
170,789 - +0.9
170,789 - -1.6
170,817 + -0.5
170,878 - -1.2
170,916 - -0.6

Or see this region's nucleotide sequence