Strain Fitness in Pseudomonas putida KT2440 around PP_0143

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
150,084	-		PP_0142	0.24	+0.4
150,396	-		PP_0142	0.51	-0.4
150,460	+		PP_0142	0.57	-0.2
150,460	+		PP_0142	0.57	+0.8
150,460	+		PP_0142	0.57	-0.8
150,460	+		PP_0142	0.57	+0.4
150,460	+		PP_0142	0.57	-0.8
150,461	-		PP_0142	0.57	-3.0
150,461	-		PP_0142	0.57	+0.6
150,461	-		PP_0142	0.57	-0.8
150,461	-		PP_0142	0.57	-0.7
150,593	-		PP_0142	0.69	+0.6
150,649	-		PP_0142	0.73	+1.5
150,666	+		PP_0142	0.75	+1.9
150,666	+		PP_0142	0.75	-0.3
150,666	+		PP_0142	0.75	-0.7
150,666	+		PP_0142	0.75	+0.6
150,858	+				-1.8
150,859	-				+0.2
150,859	-				+3.2
150,883	+				-1.9
150,883	+				+0.6
150,884	-				+1.0
150,886	+				-1.6
150,886	+				-1.7
150,886	+				-0.1
150,886	+				-2.1
150,940	+				+0.4
150,940	+				-1.6
150,941	-				+0.1
150,941	-				-0.5
150,941	-				-0.2
150,941	-				+0.8
150,941	-				-0.5
150,974	-				-0.1
150,986	+				-3.5
150,987	-				+0.4
151,016	+				+0.1
151,016	+				-0.9
151,016	+				+0.1
151,016	+				-0.6
151,016	+				-0.1
151,017	-				+0.4
151,017	-				+0.9
151,017	-				+0.2
151,017	-				-1.6
151,029	+				+1.5
151,030	-				+1.3
151,087	-				+0.4
151,087	-				+0.0
151,217	+		PP_0143	0.13	-1.4
151,217	+		PP_0143	0.13	-0.8
151,218	-		PP_0143	0.13	-0.5
151,292	+		PP_0143	0.21	-0.6
151,334	+		PP_0143	0.25	-3.6
151,335	-		PP_0143	0.25	-1.8
151,335	-		PP_0143	0.25	-0.7
151,340	+		PP_0143	0.25	-2.1
151,340	+		PP_0143	0.25	+0.1
151,341	-		PP_0143	0.25	-0.6
151,341	-		PP_0143	0.25	-0.4
151,408	+		PP_0143	0.32	+0.5
151,408	+		PP_0143	0.32	-2.1
151,408	+		PP_0143	0.32	+1.1
151,408	+		PP_0143	0.32	-0.3
151,409	-		PP_0143	0.32	-2.1
151,409	-		PP_0143	0.32	-0.0
151,409	-		PP_0143	0.32	+0.2
151,416	+		PP_0143	0.33	-0.4
151,715	+		PP_0143	0.62	-0.4
151,715	+		PP_0143	0.62	-1.8
151,716	+		PP_0143	0.62	+0.2
151,716	-		PP_0143	0.62	-1.0
151,716	-		PP_0143	0.62	-0.7
151,716	-		PP_0143	0.62	-0.2
151,716	-		PP_0143	0.62	+0.1
151,716	-		PP_0143	0.62	-0.7
151,716	-		PP_0143	0.62	-0.6
151,718	+		PP_0143	0.62	-0.8
151,719	-		PP_0143	0.62	-2.0
152,089	-				-1.9
152,114	+				-2.6
152,114	+				+0.7
152,115	-				-1.3
152,115	-				+1.0
152,191	-				+0.1
152,214	+				-0.0
152,214	+				-0.3
152,214	+				-0.7
152,315	+				-2.3
152,320	+				-1.3
152,320	+				-0.3
152,320	+				-0.3
152,321	-				-0.2
152,321	-				+0.9
152,345	+		PP_0144	0.10	-1.2
152,345	+		PP_0144	0.10	+0.8
152,346	-		PP_0144	0.10	-0.6
152,346	-		PP_0144	0.10	+2.3
152,346	-		PP_0144	0.10	+1.0
152,346	-		PP_0144	0.10	+1.2
152,346	-		PP_0144	0.10	-0.1
152,442	+		PP_0144	0.17	-0.5
152,442	+		PP_0144	0.17	-2.4
152,442	+		PP_0144	0.17	-1.1
152,445	-		PP_0144	0.17	-1.1
152,445	-		PP_0144	0.17	-0.1
152,445	-		PP_0144	0.17	+1.2
152,445	-		PP_0144	0.17	+1.5
152,465	+		PP_0144	0.19	-0.1
152,465	+		PP_0144	0.19	+0.9
152,466	-		PP_0144	0.19	+0.0
152,466	-		PP_0144	0.19	+0.9
152,466	-		PP_0144	0.19	-1.0
152,466	-		PP_0144	0.19	-0.6
152,469	-		PP_0144	0.19	-1.2
152,691	-		PP_0144	0.35	+1.4
152,723	+		PP_0144	0.37	+0.4
152,940	-		PP_0144	0.53	-1.3