Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0142 and PP_0143 are separated by 131 nucleotides PP_0143 and PP_0144 are separated by 93 nucleotides
PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949
_0142
PP_0143: PP_0143 - conserved membrane protein of unknown function, at 151,081 to 152,106
_0143
PP_0144: PP_0144 - Metalloprotease, insulinase family, at 152,200 to 153,606
_0144
Position (kb)
151
152
153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 150.084 kb on - strand, within PP_0142 at 150.396 kb on - strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.460 kb on + strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.461 kb on - strand, within PP_0142 at 150.593 kb on - strand, within PP_0142 at 150.649 kb on - strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.666 kb on + strand, within PP_0142 at 150.858 kb on + strand at 150.859 kb on - strand at 150.859 kb on - strand at 150.883 kb on + strand at 150.883 kb on + strand at 150.884 kb on - strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.886 kb on + strand at 150.940 kb on + strand at 150.940 kb on + strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.941 kb on - strand at 150.974 kb on - strand at 150.986 kb on + strand at 150.987 kb on - strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.016 kb on + strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.017 kb on - strand at 151.029 kb on + strand at 151.030 kb on - strand at 151.087 kb on - strand at 151.087 kb on - strand at 151.217 kb on + strand, within PP_0143 at 151.217 kb on + strand, within PP_0143 at 151.218 kb on - strand, within PP_0143 at 151.292 kb on + strand, within PP_0143 at 151.334 kb on + strand, within PP_0143 at 151.335 kb on - strand, within PP_0143 at 151.335 kb on - strand, within PP_0143 at 151.340 kb on + strand, within PP_0143 at 151.340 kb on + strand, within PP_0143 at 151.341 kb on - strand, within PP_0143 at 151.341 kb on - strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.408 kb on + strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.409 kb on - strand, within PP_0143 at 151.416 kb on + strand, within PP_0143 at 151.715 kb on + strand, within PP_0143 at 151.715 kb on + strand, within PP_0143 at 151.716 kb on + strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.716 kb on - strand, within PP_0143 at 151.718 kb on + strand, within PP_0143 at 151.719 kb on - strand, within PP_0143 at 152.089 kb on - strand at 152.114 kb on + strand at 152.114 kb on + strand at 152.115 kb on - strand at 152.115 kb on - strand at 152.191 kb on - strand at 152.214 kb on + strand at 152.214 kb on + strand at 152.214 kb on + strand at 152.315 kb on + strand at 152.320 kb on + strand at 152.320 kb on + strand at 152.320 kb on + strand at 152.321 kb on - strand at 152.321 kb on - strand at 152.345 kb on + strand, within PP_0144 at 152.345 kb on + strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.346 kb on - strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.442 kb on + strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.445 kb on - strand, within PP_0144 at 152.465 kb on + strand, within PP_0144 at 152.465 kb on + strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.466 kb on - strand, within PP_0144 at 152.469 kb on - strand, within PP_0144 at 152.691 kb on - strand, within PP_0144 at 152.723 kb on + strand, within PP_0144 at 152.940 kb on - strand, within PP_0144
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 150,084 - PP_0142 0.24 +0.4 150,396 - PP_0142 0.51 -0.4 150,460 + PP_0142 0.57 -0.2 150,460 + PP_0142 0.57 +0.8 150,460 + PP_0142 0.57 -0.8 150,460 + PP_0142 0.57 +0.4 150,460 + PP_0142 0.57 -0.8 150,461 - PP_0142 0.57 -3.0 150,461 - PP_0142 0.57 +0.6 150,461 - PP_0142 0.57 -0.8 150,461 - PP_0142 0.57 -0.7 150,593 - PP_0142 0.69 +0.6 150,649 - PP_0142 0.73 +1.5 150,666 + PP_0142 0.75 +1.9 150,666 + PP_0142 0.75 -0.3 150,666 + PP_0142 0.75 -0.7 150,666 + PP_0142 0.75 +0.6 150,858 + -1.8 150,859 - +0.2 150,859 - +3.2 150,883 + -1.9 150,883 + +0.6 150,884 - +1.0 150,886 + -1.6 150,886 + -1.7 150,886 + -0.1 150,886 + -2.1 150,940 + +0.4 150,940 + -1.6 150,941 - +0.1 150,941 - -0.5 150,941 - -0.2 150,941 - +0.8 150,941 - -0.5 150,974 - -0.1 150,986 + -3.5 150,987 - +0.4 151,016 + +0.1 151,016 + -0.9 151,016 + +0.1 151,016 + -0.6 151,016 + -0.1 151,017 - +0.4 151,017 - +0.9 151,017 - +0.2 151,017 - -1.6 151,029 + +1.5 151,030 - +1.3 151,087 - +0.4 151,087 - +0.0 151,217 + PP_0143 0.13 -1.4 151,217 + PP_0143 0.13 -0.8 151,218 - PP_0143 0.13 -0.5 151,292 + PP_0143 0.21 -0.6 151,334 + PP_0143 0.25 -3.6 151,335 - PP_0143 0.25 -1.8 151,335 - PP_0143 0.25 -0.7 151,340 + PP_0143 0.25 -2.1 151,340 + PP_0143 0.25 +0.1 151,341 - PP_0143 0.25 -0.6 151,341 - PP_0143 0.25 -0.4 151,408 + PP_0143 0.32 +0.5 151,408 + PP_0143 0.32 -2.1 151,408 + PP_0143 0.32 +1.1 151,408 + PP_0143 0.32 -0.3 151,409 - PP_0143 0.32 -2.1 151,409 - PP_0143 0.32 -0.0 151,409 - PP_0143 0.32 +0.2 151,416 + PP_0143 0.33 -0.4 151,715 + PP_0143 0.62 -0.4 151,715 + PP_0143 0.62 -1.8 151,716 + PP_0143 0.62 +0.2 151,716 - PP_0143 0.62 -1.0 151,716 - PP_0143 0.62 -0.7 151,716 - PP_0143 0.62 -0.2 151,716 - PP_0143 0.62 +0.1 151,716 - PP_0143 0.62 -0.7 151,716 - PP_0143 0.62 -0.6 151,718 + PP_0143 0.62 -0.8 151,719 - PP_0143 0.62 -2.0 152,089 - -1.9 152,114 + -2.6 152,114 + +0.7 152,115 - -1.3 152,115 - +1.0 152,191 - +0.1 152,214 + -0.0 152,214 + -0.3 152,214 + -0.7 152,315 + -2.3 152,320 + -1.3 152,320 + -0.3 152,320 + -0.3 152,321 - -0.2 152,321 - +0.9 152,345 + PP_0144 0.10 -1.2 152,345 + PP_0144 0.10 +0.8 152,346 - PP_0144 0.10 -0.6 152,346 - PP_0144 0.10 +2.3 152,346 - PP_0144 0.10 +1.0 152,346 - PP_0144 0.10 +1.2 152,346 - PP_0144 0.10 -0.1 152,442 + PP_0144 0.17 -0.5 152,442 + PP_0144 0.17 -2.4 152,442 + PP_0144 0.17 -1.1 152,445 - PP_0144 0.17 -1.1 152,445 - PP_0144 0.17 -0.1 152,445 - PP_0144 0.17 +1.2 152,445 - PP_0144 0.17 +1.5 152,465 + PP_0144 0.19 -0.1 152,465 + PP_0144 0.19 +0.9 152,466 - PP_0144 0.19 +0.0 152,466 - PP_0144 0.19 +0.9 152,466 - PP_0144 0.19 -1.0 152,466 - PP_0144 0.19 -0.6 152,469 - PP_0144 0.19 -1.2 152,691 - PP_0144 0.35 +1.4 152,723 + PP_0144 0.37 +0.4 152,940 - PP_0144 0.53 -1.3
Or see this region's nucleotide sequence