Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0115 and PP_0116 are separated by 60 nucleotides PP_0116 and PP_0117 are separated by 126 nucleotides PP_0117 and PP_0118 overlap by 8 nucleotides PP_0118 and PP_0119 overlap by 4 nucleotides
PP_0115: PP_0115 - hydroperoxidase - self catalytic heme d synthase, at 120,055 to 122,190
_0115
PP_0116: PP_0116 - putative lipoprotein, at 122,251 to 122,958
_0116
PP_0117: PP_0117 - Zn(2+) ABC transporter - permease subunit, at 123,085 to 123,867
_0117
PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633
_0118
PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115
_0119
Position (kb) 123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 122.225 kb on + strand at 122.225 kb on + strand at 122.225 kb on + strand at 122.237 kb on + strand at 122.252 kb on + strand at 122.253 kb on - strand at 122.404 kb on + strand, within PP_0116 at 122.421 kb on - strand, within PP_0116 at 122.421 kb on - strand, within PP_0116 at 122.499 kb on + strand, within PP_0116 at 122.500 kb on - strand, within PP_0116 at 122.707 kb on - strand, within PP_0116 at 122.707 kb on - strand, within PP_0116 at 122.717 kb on + strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.741 kb on + strand, within PP_0116 at 122.741 kb on + strand, within PP_0116 at 122.973 kb on - strand at 122.997 kb on + strand at 122.998 kb on - strand at 122.998 kb on - strand at 123.030 kb on + strand at 123.030 kb on + strand at 123.031 kb on - strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.119 kb on - strand at 123.119 kb on - strand at 123.291 kb on + strand, within PP_0117 at 123.292 kb on - strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.188 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.343 kb on + strand, within PP_0118 at 124.344 kb on - strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.420 kb on - strand, within PP_0118 at 124.448 kb on + strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.650 kb on + strand at 124.651 kb on - strand at 124.853 kb on - strand, within PP_0119
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 122,225 + -0.7 122,225 + +0.5 122,225 + +2.5 122,237 + -0.1 122,252 + +1.2 122,253 - +1.1 122,404 + PP_0116 0.22 -0.3 122,421 - PP_0116 0.24 +0.3 122,421 - PP_0116 0.24 -1.4 122,499 + PP_0116 0.35 +0.5 122,500 - PP_0116 0.35 +1.0 122,707 - PP_0116 0.64 +2.8 122,707 - PP_0116 0.64 +0.8 122,717 + PP_0116 0.66 +0.3 122,718 - PP_0116 0.66 -0.4 122,718 - PP_0116 0.66 +1.5 122,718 - PP_0116 0.66 -0.1 122,741 + PP_0116 0.69 +1.9 122,741 + PP_0116 0.69 +2.1 122,973 - -0.9 122,997 + -1.8 122,998 - +1.6 122,998 - +0.5 123,030 + -0.7 123,030 + -0.4 123,031 - +0.2 123,118 + -1.6 123,118 + -3.4 123,119 - -0.3 123,119 - -3.4 123,291 + PP_0117 0.26 -4.2 123,292 - PP_0117 0.26 -1.1 123,331 + PP_0117 0.31 -3.5 123,331 + PP_0117 0.31 -1.2 123,527 + PP_0117 0.56 -3.3 123,527 + PP_0117 0.56 -0.1 123,527 + PP_0117 0.56 -0.2 123,527 + PP_0117 0.56 -1.5 123,527 + PP_0117 0.56 -3.6 123,528 - PP_0117 0.57 -0.7 123,528 - PP_0117 0.57 -1.8 123,788 - PP_0117 0.90 -2.6 123,788 - PP_0117 0.90 -2.1 123,951 + PP_0118 0.12 -2.2 123,951 + PP_0118 0.12 -0.8 123,951 + PP_0118 0.12 -1.5 123,951 + PP_0118 0.12 -1.7 123,952 - PP_0118 0.12 -1.6 123,952 - PP_0118 0.12 -0.9 123,952 - PP_0118 0.12 -0.5 123,952 - PP_0118 0.12 +0.2 123,952 - PP_0118 0.12 +0.6 124,152 + PP_0118 0.38 -0.5 124,152 + PP_0118 0.38 -1.7 124,153 - PP_0118 0.38 -3.8 124,153 - PP_0118 0.38 -1.8 124,153 - PP_0118 0.38 -3.6 124,187 + PP_0118 0.42 -0.6 124,187 + PP_0118 0.42 -3.0 124,188 - PP_0118 0.42 -1.1 124,271 - PP_0118 0.53 -2.3 124,271 - PP_0118 0.53 -3.6 124,343 + PP_0118 0.62 -1.7 124,344 - PP_0118 0.63 -3.5 124,419 + PP_0118 0.72 -2.4 124,419 + PP_0118 0.72 -2.6 124,419 + PP_0118 0.72 -1.9 124,420 - PP_0118 0.72 -2.1 124,448 + PP_0118 0.76 -1.6 124,482 - PP_0118 0.80 -0.8 124,482 - PP_0118 0.80 -2.8 124,650 + -1.3 124,651 - -1.1 124,853 - PP_0119 0.46 -0.3
Or see this region's nucleotide sequence