Strain Fitness in Pseudomonas putida KT2440 around PP_0073

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0072 and PP_0073 are separated by 132 nucleotidesPP_0073 and PP_0074 are separated by 25 nucleotidesPP_0074 and PP_0075 are separated by 129 nucleotides PP_0072: PP_0072 - quinone oxidoreductase, at 82,151 to 83,128 _0072 PP_0073: PP_0073 - Coproporphyrinogen-III oxidase, aerobic, at 83,261 to 84,172 _0073 PP_0074: PP_0074 - shikimate 5-dehydrogenase, at 84,198 to 85,022 _0074 PP_0075: PP_0075 - putative choline sulfate transporter, at 85,152 to 86,717 _0075 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.324 kb on - strand, within PP_0072at 82.324 kb on - strand, within PP_0072at 82.350 kb on + strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.527 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.741 kb on - strand, within PP_0072at 82.827 kb on - strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.832 kb on - strand, within PP_0072at 82.832 kb on - strand, within PP_0072at 82.846 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.923 kb on - strand, within PP_0072at 82.923 kb on - strand, within PP_0072at 82.975 kb on - strand, within PP_0072at 82.975 kb on - strand, within PP_0072at 82.992 kb on + strand, within PP_0072at 82.993 kb on - strand, within PP_0072at 82.993 kb on - strand, within PP_0072at 82.996 kb on + strand, within PP_0072at 83.141 kb on + strandat 83.142 kb on - strandat 83.217 kb on + strandat 83.217 kb on + strandat 83.218 kb on - strandat 83.218 kb on - strandat 84.170 kb on + strandat 84.171 kb on - strandat 84.187 kb on + strandat 84.207 kb on + strandat 85.077 kb on + strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.084 kb on + strandat 85.085 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
82,323 + PP_0072 0.18 +1.4
82,323 + PP_0072 0.18 +1.2
82,323 + PP_0072 0.18 -0.0
82,323 + PP_0072 0.18 -2.0
82,323 + PP_0072 0.18 +0.2
82,323 + PP_0072 0.18 +0.4
82,323 + PP_0072 0.18 +0.0
82,323 + PP_0072 0.18 +1.8
82,323 + PP_0072 0.18 +0.1
82,324 - PP_0072 0.18 -0.8
82,324 - PP_0072 0.18 +0.9
82,350 + PP_0072 0.20 +0.5
82,351 - PP_0072 0.20 +0.4
82,351 - PP_0072 0.20 +0.2
82,351 - PP_0072 0.20 +0.3
82,351 - PP_0072 0.20 +0.2
82,488 + PP_0072 0.34 +2.3
82,488 + PP_0072 0.34 -0.1
82,488 + PP_0072 0.34 +0.7
82,488 + PP_0072 0.34 -0.1
82,489 - PP_0072 0.35 -0.1
82,489 - PP_0072 0.35 +0.9
82,489 - PP_0072 0.35 -1.1
82,527 - PP_0072 0.38 +1.1
82,671 - PP_0072 0.53 +1.1
82,671 - PP_0072 0.53 +0.8
82,671 - PP_0072 0.53 -0.1
82,671 - PP_0072 0.53 +0.6
82,722 + PP_0072 0.58 +0.7
82,722 + PP_0072 0.58 -0.4
82,722 + PP_0072 0.58 +0.1
82,722 + PP_0072 0.58 +0.1
82,722 + PP_0072 0.58 -1.3
82,723 - PP_0072 0.58 +0.5
82,723 - PP_0072 0.58 -0.8
82,723 - PP_0072 0.58 +1.2
82,740 + PP_0072 0.60 -0.1
82,740 + PP_0072 0.60 +1.9
82,740 + PP_0072 0.60 +0.4
82,740 + PP_0072 0.60 +1.3
82,740 + PP_0072 0.60 -1.4
82,740 + PP_0072 0.60 +0.4
82,741 - PP_0072 0.60 +1.6
82,827 - PP_0072 0.69 +0.3
82,831 + PP_0072 0.70 -2.2
82,831 + PP_0072 0.70 +0.7
82,831 + PP_0072 0.70 +0.6
82,831 + PP_0072 0.70 -0.5
82,832 - PP_0072 0.70 +1.1
82,832 - PP_0072 0.70 +0.3
82,846 - PP_0072 0.71 +0.0
82,887 - PP_0072 0.75 +0.1
82,887 - PP_0072 0.75 +0.8
82,887 - PP_0072 0.75 +1.2
82,887 - PP_0072 0.75 -0.9
82,887 - PP_0072 0.75 -1.7
82,923 - PP_0072 0.79 -0.4
82,923 - PP_0072 0.79 -0.8
82,975 - PP_0072 0.84 -0.4
82,975 - PP_0072 0.84 -0.8
82,992 + PP_0072 0.86 -2.5
82,993 - PP_0072 0.86 +0.2
82,993 - PP_0072 0.86 +0.5
82,996 + PP_0072 0.86 -0.7
83,141 + -0.4
83,142 - +0.8
83,217 + -0.2
83,217 + -1.1
83,218 - +0.1
83,218 - -0.4
84,170 + -1.5
84,171 - +0.3
84,187 + -0.4
84,207 + +1.3
85,077 + -0.9
85,078 - -1.9
85,078 - -0.7
85,078 - +0.1
85,078 - -0.9
85,084 + -0.8
85,085 - -1.2

Or see this region's nucleotide sequence