Strain Fitness in Pseudomonas putida KT2440 around PP_4298

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4297 and PP_4298 are separated by 54 nucleotidesPP_4298 and PP_4299 are separated by 152 nucleotides PP_4297: PP_4297 - glyoxylate carboligase, at 4,886,942 to 4,888,717 _4297 PP_4298: PP_4298 - hydroxypyruvate isomerase, at 4,888,772 to 4,889,554 _4298 PP_4299: PP_4299 - tartronate semialdehyde reductase, at 4,889,707 to 4,890,600 _4299 Position (kb) 4888 4889 4890Strain fitness (log2 ratio) -3 -2 -1 0 1at 4887.815 kb on + strand, within PP_4297at 4887.911 kb on - strand, within PP_4297at 4888.067 kb on + strand, within PP_4297at 4888.068 kb on - strand, within PP_4297at 4888.106 kb on + strand, within PP_4297at 4888.107 kb on - strand, within PP_4297at 4888.107 kb on - strand, within PP_4297at 4888.107 kb on - strand, within PP_4297at 4888.160 kb on + strand, within PP_4297at 4888.160 kb on + strand, within PP_4297at 4888.160 kb on + strand, within PP_4297at 4888.161 kb on - strand, within PP_4297at 4888.280 kb on + strand, within PP_4297at 4888.281 kb on - strand, within PP_4297at 4888.281 kb on - strand, within PP_4297at 4888.337 kb on + strand, within PP_4297at 4888.338 kb on - strand, within PP_4297at 4888.338 kb on - strand, within PP_4297at 4888.347 kb on + strand, within PP_4297at 4888.348 kb on - strand, within PP_4297at 4888.409 kb on + strand, within PP_4297at 4888.410 kb on - strand, within PP_4297at 4888.410 kb on - strand, within PP_4297at 4888.416 kb on + strand, within PP_4297at 4888.417 kb on - strand, within PP_4297at 4888.417 kb on - strand, within PP_4297at 4888.460 kb on + strandat 4888.460 kb on + strand, within PP_4297at 4888.461 kb on - strand, within PP_4297at 4888.461 kb on - strand, within PP_4297at 4888.883 kb on + strand, within PP_4298at 4889.049 kb on - strand, within PP_4298at 4889.049 kb on - strand, within PP_4298at 4889.068 kb on + strand, within PP_4298at 4889.069 kb on - strand, within PP_4298at 4889.128 kb on + strand, within PP_4298at 4889.129 kb on - strand, within PP_4298at 4889.129 kb on - strand, within PP_4298at 4889.231 kb on + strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.232 kb on - strand, within PP_4298at 4889.300 kb on + strand, within PP_4298at 4889.300 kb on + strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.301 kb on - strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.309 kb on + strand, within PP_4298at 4889.310 kb on - strand, within PP_4298at 4889.432 kb on + strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.433 kb on - strand, within PP_4298at 4889.680 kb on - strandat 4889.688 kb on + strandat 4889.689 kb on - strandat 4889.689 kb on - strandat 4889.689 kb on - strandat 4889.712 kb on + strandat 4890.053 kb on - strand, within PP_4299

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,887,815 + PP_4297 0.49 +0.3
4,887,911 - PP_4297 0.55 +0.2
4,888,067 + PP_4297 0.63 -0.3
4,888,068 - PP_4297 0.63 -0.5
4,888,106 + PP_4297 0.66 -0.4
4,888,107 - PP_4297 0.66 -0.4
4,888,107 - PP_4297 0.66 -0.1
4,888,107 - PP_4297 0.66 -0.6
4,888,160 + PP_4297 0.69 +0.2
4,888,160 + PP_4297 0.69 -0.5
4,888,160 + PP_4297 0.69 -0.5
4,888,161 - PP_4297 0.69 -0.3
4,888,280 + PP_4297 0.75 -0.3
4,888,281 - PP_4297 0.75 -0.1
4,888,281 - PP_4297 0.75 -0.3
4,888,337 + PP_4297 0.79 +0.7
4,888,338 - PP_4297 0.79 +0.5
4,888,338 - PP_4297 0.79 +0.1
4,888,347 + PP_4297 0.79 -1.0
4,888,348 - PP_4297 0.79 +0.3
4,888,409 + PP_4297 0.83 -1.0
4,888,410 - PP_4297 0.83 -0.8
4,888,410 - PP_4297 0.83 -0.5
4,888,416 + PP_4297 0.83 -1.3
4,888,417 - PP_4297 0.83 -3.0
4,888,417 - PP_4297 0.83 -0.8
4,888,460 + +0.9
4,888,460 + PP_4297 0.85 +0.3
4,888,461 - PP_4297 0.86 -0.4
4,888,461 - PP_4297 0.86 -0.9
4,888,883 + PP_4298 0.14 +0.2
4,889,049 - PP_4298 0.35 +0.2
4,889,049 - PP_4298 0.35 +0.2
4,889,068 + PP_4298 0.38 -0.4
4,889,069 - PP_4298 0.38 -0.8
4,889,128 + PP_4298 0.45 -1.0
4,889,129 - PP_4298 0.46 -0.3
4,889,129 - PP_4298 0.46 -0.7
4,889,231 + PP_4298 0.59 +0.0
4,889,232 - PP_4298 0.59 -0.8
4,889,232 - PP_4298 0.59 -0.3
4,889,232 - PP_4298 0.59 -0.8
4,889,300 + PP_4298 0.67 +0.8
4,889,300 + PP_4298 0.67 -1.2
4,889,301 - PP_4298 0.68 -0.5
4,889,301 - PP_4298 0.68 -0.8
4,889,301 - PP_4298 0.68 -0.6
4,889,309 + PP_4298 0.69 -0.7
4,889,309 + PP_4298 0.69 -0.2
4,889,309 + PP_4298 0.69 -0.3
4,889,309 + PP_4298 0.69 +0.8
4,889,309 + PP_4298 0.69 -0.3
4,889,310 - PP_4298 0.69 -1.0
4,889,432 + PP_4298 0.84 -0.8
4,889,433 - PP_4298 0.84 -0.3
4,889,433 - PP_4298 0.84 +0.2
4,889,433 - PP_4298 0.84 +0.2
4,889,433 - PP_4298 0.84 -0.9
4,889,433 - PP_4298 0.84 -0.9
4,889,680 - -0.5
4,889,688 + -0.1
4,889,689 - -0.3
4,889,689 - +0.6
4,889,689 - -0.7
4,889,712 + +0.8
4,890,053 - PP_4299 0.39 +0.9

Or see this region's nucleotide sequence