Strain Fitness in Pseudomonas putida KT2440 around PP_5025

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
5,723,414	-		PP_5024	0.14	-0.7
5,723,449	+		PP_5024	0.19	+0.6
5,723,516	-		PP_5024	0.27	+1.0
5,723,527	+		PP_5024	0.29	-0.6
5,723,597	-		PP_5024	0.37	-0.3
5,723,665	+		PP_5024	0.46	-0.2
5,723,689	+		PP_5024	0.49	-0.3
5,723,689	+		PP_5024	0.49	-1.4
5,723,689	+		PP_5024	0.49	-0.5
5,723,690	-		PP_5024	0.49	-1.8
5,723,854	+		PP_5024	0.69	-0.5
5,723,968	+		PP_5024	0.84	+0.5
5,723,968	+		PP_5024	0.84	-0.3
5,723,968	+		PP_5024	0.84	-0.9
5,723,969	-		PP_5024	0.84	+0.7
5,723,969	-		PP_5024	0.84	-0.4
5,723,969	-		PP_5024	0.84	-0.2
5,724,086	-				-0.6
5,724,133	+				+0.2
5,724,134	-				+0.6
5,724,134	-				-0.7
5,724,134	-				+0.5
5,724,134	-				+0.3
5,724,185	+				-2.1
5,724,185	+				+0.1
5,724,281	+				+0.1
5,724,282	-				+0.4
5,724,282	-				+0.0
5,724,295	+				-0.3
5,724,296	-				-1.3
5,724,305	-				-0.9
5,724,571	+				-0.5
5,724,759	+		PP_5025	0.14	-1.0
5,724,759	+		PP_5025	0.14	-1.5
5,724,760	-		PP_5025	0.14	-0.2
5,724,796	-		PP_5025	0.16	-0.8
5,725,101	-		PP_5025	0.28	-1.0
5,725,318	-		PP_5025	0.36	+0.3
5,725,318	-		PP_5025	0.36	-1.0
5,725,318	-		PP_5025	0.36	-0.7
5,725,318	-		PP_5025	0.36	-0.8
5,725,398	+		PP_5025	0.39	+0.3
5,725,398	+		PP_5025	0.39	+0.2
5,725,543	-		PP_5025	0.45	-1.4
5,725,543	-		PP_5025	0.45	-1.9
5,725,560	+		PP_5025	0.45	-1.0
5,725,773	+		PP_5025	0.54	-2.7
5,725,806	+		PP_5025	0.55	-3.1
5,725,807	-		PP_5025	0.55	-1.3
5,725,807	-		PP_5025	0.55	-0.9
5,725,807	-		PP_5025	0.55	-1.8
5,725,938	+		PP_5025	0.60	-0.4
5,725,938	+		PP_5025	0.60	-0.8
5,725,939	-		PP_5025	0.60	+0.3
5,725,939	-		PP_5025	0.60	-1.0
5,725,939	-		PP_5025	0.60	-1.4
5,725,939	-		PP_5025	0.60	-0.5
5,725,944	+		PP_5025	0.60	-0.9
5,725,944	+		PP_5025	0.60	-0.9
5,726,020	-		PP_5025	0.63	-0.1
5,726,284	-		PP_5025	0.74	-1.1
5,726,284	-		PP_5025	0.74	-1.0
5,726,397	+		PP_5025	0.78	-1.6
5,726,476	-		PP_5025	0.81	-0.5
5,726,496	+		PP_5025	0.82	+0.5
5,726,497	-		PP_5025	0.82	+0.6
5,726,544	+		PP_5025	0.84	-0.5
5,726,856	-				-1.3
5,726,856	-				-1.2
5,726,856	-				-1.1
5,726,856	-				-1.9
5,726,912	+				+0.1
5,726,912	+				-0.5
5,726,913	-				-1.2
5,726,913	-				+0.1
5,726,913	-				-0.1
5,726,913	-				-1.0
5,726,913	-				-0.9
5,726,913	-				-1.0
5,726,913	-				-0.2
5,726,925	+				-1.4
5,726,926	-				-1.3
5,726,980	+				-2.6
5,726,980	+				-0.8
5,726,981	-				-0.2
5,726,981	-				+0.2
5,726,981	-				-1.8
5,727,260	+		PP_5026	0.18	-1.2
5,727,261	-		PP_5026	0.18	-0.8
5,727,262	+		PP_5026	0.18	-2.1
5,727,262	+		PP_5026	0.18	-0.6
5,727,263	-		PP_5026	0.18	-0.4
5,727,566	+		PP_5026	0.36	-0.7
5,727,566	+		PP_5026	0.36	-1.8
5,727,567	-		PP_5026	0.36	-0.8
5,727,667	+		PP_5026	0.42	+0.5
5,727,668	-		PP_5026	0.42	-0.3
5,727,668	-		PP_5026	0.42	-0.4
5,727,668	-		PP_5026	0.42	-2.2
5,727,853	+		PP_5026	0.53	-0.3
5,727,854	-		PP_5026	0.53	+0.3
5,727,892	+		PP_5026	0.56	-1.2
5,727,897	-		PP_5026	0.56	-0.1