Strain Fitness in Pseudomonas putida KT2440 around PP_4559

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
5,179,585	+		PP_4557	0.27	+1.1
5,179,585	+		PP_4557	0.27	+0.2
5,179,585	+		PP_4557	0.27	+0.4
5,179,585	+		PP_4557	0.27	+0.1
5,179,585	+		PP_4557	0.27	+1.0
5,179,586	-		PP_4557	0.28	-1.8
5,179,586	-		PP_4557	0.28	-1.0
5,179,586	-		PP_4557	0.28	-0.1
5,179,586	-		PP_4557	0.28	+0.2
5,179,586	-		PP_4557	0.28	-1.7
5,179,586	-		PP_4557	0.28	-0.1
5,179,603	-		PP_4557	0.34	-0.4
5,179,603	-		PP_4557	0.34	+0.9
5,179,603	-		PP_4557	0.34	-0.7
5,179,669	+		PP_4557	0.60	+0.1
5,179,669	+		PP_4557	0.60	+0.6
5,179,675	+		PP_4557	0.62	-0.6
5,179,676	-		PP_4557	0.62	+0.2
5,179,739	+		PP_4557	0.87	+0.1
5,179,739	+		PP_4557	0.87	-0.1
5,179,739	+		PP_4557	0.87	+0.8
5,179,740	-		PP_4557	0.87	+0.1
5,179,762	-				-0.3
5,179,816	-				-1.2
5,179,816	-				-0.3
5,179,816	-				+0.1
5,179,816	-				-0.3
5,179,816	-				+0.1
5,179,816	-				+0.3
5,179,848	+				+0.8
5,179,848	+				+2.1
5,179,848	+				+0.4
5,179,855	+				-0.4
5,179,855	+				+1.7
5,179,855	+				+0.1
5,179,855	+				-1.0
5,179,855	+				+0.4
5,179,856	-				-0.6
5,179,856	-				-0.7
5,179,870	-				-0.4
5,179,886	-				-0.1
5,180,058	+				-0.2
5,180,058	+				-0.3
5,180,059	-				-0.5
5,180,059	-				-0.5
5,180,106	+		PP_4558	0.12	-0.4
5,180,107	-		PP_4558	0.12	-0.5
5,180,107	-		PP_4558	0.12	-0.8
5,180,158	+		PP_4558	0.23	+1.1
5,180,158	+		PP_4558	0.23	-0.8
5,180,159	-		PP_4558	0.24	-0.3
5,180,347	-		PP_4558	0.66	-0.0
5,180,407	+		PP_4558	0.80	-0.5
5,180,407	+		PP_4558	0.80	-0.7
5,180,408	-		PP_4558	0.80	+0.1
5,180,412	+		PP_4558	0.81	-0.7
5,180,412	+		PP_4558	0.81	-0.4
5,180,413	-		PP_4558	0.81	+1.2
5,180,413	-		PP_4558	0.81	-1.3
5,180,530	-		PP_4559	0.15	-0.7
5,180,532	-		PP_4559	0.15	+0.2
5,180,532	-		PP_4559	0.15	+0.3
5,180,638	+		PP_4559	0.35	-0.3
5,180,638	+		PP_4559	0.35	-0.6
5,180,638	+		PP_4559	0.35	-0.8
5,180,638	+		PP_4559	0.35	-0.7
5,180,639	-		PP_4559	0.35	-0.8
5,180,639	-		PP_4559	0.35	-1.5
5,180,639	-		PP_4559	0.35	-2.5
5,181,007	-				-1.0
5,181,007	-				-0.9
5,181,043	+				+0.2
5,181,044	-				+0.4
5,181,170	+		PP_4560	0.19	-1.6
5,181,171	-		PP_4560	0.19	-2.9
5,181,176	+				+1.8
5,181,176	+		PP_4560	0.20	-0.0
5,181,176	+		PP_4560	0.20	-2.2
5,181,177	-		PP_4560	0.20	-1.4
5,181,177	-				-1.6
5,181,177	-		PP_4560	0.20	-0.8
5,181,212	+		PP_4560	0.24	+1.8
5,181,212	+		PP_4560	0.24	-0.8
5,181,224	+		PP_4560	0.25	-0.2
5,181,245	+		PP_4560	0.27	-1.4
5,181,245	+		PP_4560	0.27	-0.8
5,181,248	+		PP_4560	0.27	-2.8
5,181,344	+		PP_4560	0.37	-1.2
5,181,344	+		PP_4560	0.37	-2.1
5,181,344	+		PP_4560	0.37	-1.2
5,181,347	+		PP_4560	0.38	+0.2
5,181,347	+		PP_4560	0.38	-0.2
5,181,347	+		PP_4560	0.38	-2.2
5,181,348	-		PP_4560	0.38	-3.3
5,181,348	-		PP_4560	0.38	+1.8
5,181,348	-		PP_4560	0.38	-3.3
5,181,348	-		PP_4560	0.38	-1.2
5,181,348	-		PP_4560	0.38	-1.0
5,181,348	-		PP_4560	0.38	+1.8
5,181,525	-		PP_4560	0.56	+0.4
5,181,525	-		PP_4560	0.56	-2.2
5,181,578	+		PP_4560	0.62	-0.1
5,181,579	-		PP_4560	0.62	-1.7
5,181,645	+		PP_4560	0.69	-2.5
5,181,836	+		PP_4560	0.89	-1.8
5,181,854	+				+0.0
5,181,855	-				+0.2
5,181,855	-				-0.2
5,181,855	-				-2.7
5,181,855	-				-1.2
5,181,942	+				-2.2
5,181,969	+				-1.4
5,181,969	+				+0.1
5,181,983	+				+0.2
5,181,983	+				-0.6
5,181,984	-				+0.2
5,181,984	-				+1.6
5,181,984	-				+1.0
5,181,986	+				-0.8
5,181,986	+				-0.8