Strain Fitness in Pseudomonas putida KT2440 around PP_4213

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,759,410	-		PP_4212	0.77	-0.4
4,759,642	+				-0.8
4,759,713	+				-0.8
4,759,713	+				-0.5
4,759,714	-				+0.7
4,759,714	-				+0.4
4,759,714	-				-0.6
4,759,790	-				-0.6
4,759,790	-				+0.6
4,759,815	+				-0.7
4,759,816	-				+0.2
4,759,835	+				+0.3
4,759,836	-				+1.0
4,759,934	+				+0.6
4,760,014	+				-0.2
4,760,014	+				-0.7
4,760,014	+				-2.8
4,760,014	+				-2.2
4,760,065	+				-0.6
4,760,416	+		PP_4213	0.34	-3.1
4,760,488	+		PP_4213	0.40	-1.5
4,760,488	+		PP_4213	0.40	-2.1
4,760,488	+		PP_4213	0.40	-2.5
4,760,875	+		PP_4213	0.67	-1.9
4,761,104	+		PP_4213	0.84	-1.5
4,761,104	+		PP_4213	0.84	-0.8
4,761,240	+				-1.3
4,761,732	+		PP_4214	0.30	-2.5
4,761,789	+		PP_4214	0.35	-1.6
4,761,789	+		PP_4214	0.35	-2.8
4,761,813	+		PP_4214	0.37	-1.9
4,761,850	+		PP_4214	0.39	-2.4
4,761,851	-		PP_4214	0.40	-0.6
4,761,892	+		PP_4214	0.43	-0.1
4,761,895	+		PP_4214	0.43	-1.3
4,762,263	+		PP_4214	0.72	-1.2