Strain Fitness in Pseudomonas putida KT2440 around PP_3660

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,156,066	-		PP_3659	0.29	+0.0
4,156,082	+		PP_3659	0.31	+2.5
4,156,082	+		PP_3659	0.31	-1.1
4,156,082	+		PP_3659	0.31	-0.7
4,156,082	+		PP_3659	0.31	+0.3
4,156,083	-		PP_3659	0.31	-1.0
4,156,092	-		PP_3659	0.32	-1.2
4,156,124	+		PP_3659	0.35	+0.3
4,156,180	+		PP_3659	0.40	+0.7
4,156,180	+		PP_3659	0.40	-0.2
4,156,181	-		PP_3659	0.41	+0.0
4,156,307	+		PP_3659	0.53	+0.3
4,156,307	+		PP_3659	0.53	+0.3
4,156,409	+		PP_3659	0.63	-0.2
4,156,447	+		PP_3659	0.66	-0.2
4,156,447	+		PP_3659	0.66	-0.1
4,156,547	+		PP_3659	0.76	-0.4
4,156,547	+		PP_3659	0.76	-0.6
4,156,631	+		PP_3659	0.84	-1.2
4,156,631	+		PP_3659	0.84	-0.4
4,156,631	+		PP_3659	0.84	+0.4
4,156,631	+		PP_3659	0.84	+0.8
4,156,632	-		PP_3659	0.85	+0.5
4,156,632	-		PP_3659	0.85	+0.0
4,156,632	-				+1.4
4,156,641	+		PP_3659	0.85	+1.4
4,156,642	-		PP_3659	0.85	+0.3
4,156,679	+		PP_3659	0.89	-0.0
4,156,679	+		PP_3659	0.89	-0.2
4,156,680	-		PP_3659	0.89	-0.2
4,156,719	+				-0.5
4,156,719	+				+1.3
4,156,719	+				+0.7
4,156,719	+				+0.4
4,156,720	-				+0.6
4,156,720	-				-0.3
4,156,720	-				-1.1
4,156,814	+				-0.3
4,156,838	+				-0.5
4,156,838	+				+1.3
4,156,839	-				-1.2
4,156,839	-				+0.1
4,156,839	-				+0.5
4,156,852	+				-0.8
4,156,852	+				-0.9
4,156,853	-				+0.0
4,156,854	+				-1.1
4,156,854	+				+1.7
4,156,854	+				+0.0
4,156,855	-				+1.3
4,156,855	-				-0.2
4,156,855	-				-0.4
4,156,855	-				-0.3
4,156,861	+				-0.9
4,156,866	+				+0.1
4,156,866	+				-0.8
4,156,866	+				+0.2
4,156,866	+				+0.6
4,156,866	+				+0.4
4,156,867	-				-0.6
4,156,867	-				-0.1
4,156,867	-				-0.6
4,156,867	-				+0.3
4,156,924	+				+1.1
4,156,924	+				+0.5
4,156,924	+				-0.5
4,156,925	-				+0.1
4,156,942	+				-1.6
4,156,942	+				+0.5
4,156,942	+				+0.5
4,156,943	-				+1.5
4,156,953	+				-0.4
4,156,953	+				-0.2
4,156,953	+				-0.5
4,156,954	-				+0.0
4,156,954	-				+0.7
4,156,954	-				-0.7
4,156,986	+				-0.1
4,156,987	-				-0.6
4,157,105	+		PP_3660	0.13	-0.6
4,157,196	-		PP_3660	0.23	-1.0
4,157,414	-		PP_3660	0.48	-0.7
4,157,458	+		PP_3660	0.53	-0.9
4,157,556	+		PP_3660	0.64	-0.1
4,157,557	-		PP_3660	0.64	+0.1
4,157,557	-		PP_3660	0.64	-0.6
4,157,568	+		PP_3660	0.65	-1.3
4,157,896	+				+0.3
4,158,113	+		PP_3661	0.11	-0.3
4,158,168	+		PP_3661	0.17	+0.5
4,158,168	+		PP_3661	0.17	+0.4
4,158,168	+		PP_3661	0.17	-1.0
4,158,168	+		PP_3661	0.17	-0.5
4,158,168	+		PP_3661	0.17	-0.5
4,158,169	-		PP_3661	0.17	+0.9
4,158,169	-		PP_3661	0.17	+0.3
4,158,169	-		PP_3661	0.17	-0.2
4,158,241	+		PP_3661	0.24	-1.0
4,158,241	+		PP_3661	0.24	-0.9
4,158,242	-		PP_3661	0.24	-0.0
4,158,508	+		PP_3661	0.49	+0.7
4,158,509	-		PP_3661	0.49	-0.1
4,158,509	-		PP_3661	0.49	-0.4
4,158,509	-		PP_3661	0.49	-0.4
4,158,509	-		PP_3661	0.49	+0.0
4,158,521	+		PP_3661	0.50	+0.3
4,158,522	-		PP_3661	0.50	-0.1
4,158,634	+		PP_3661	0.61	-1.4
4,158,635	-		PP_3661	0.61	+1.2
4,158,718	+		PP_3661	0.68	+0.0