Strain Fitness in Pseudomonas putida KT2440 around PP_2225

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,531,986	+				+0.5
2,531,986	+				+0.4
2,531,987	-				+0.4
2,531,987	-				-0.3
2,531,987	-				+0.3
2,532,000	+				-0.0
2,532,000	+				-0.1
2,532,001	-				+1.2
2,532,032	+				-1.7
2,532,033	-				+0.1
2,532,201	+				-0.5
2,532,201	+				-0.0
2,532,201	+				-0.4
2,532,267	+				+0.2
2,532,268	-				-0.1
2,532,282	+		PP_2223	0.10	+0.3
2,532,282	+		PP_2223	0.10	+0.3
2,532,287	-		PP_2223	0.11	-1.5
2,532,309	+		PP_2223	0.15	+0.5
2,532,309	+		PP_2223	0.15	+0.1
2,532,310	-		PP_2223	0.15	-0.9
2,532,310	-		PP_2223	0.15	+0.1
2,532,345	+		PP_2223	0.22	-2.5
2,532,379	+		PP_2223	0.28	-0.5
2,532,379	+		PP_2223	0.28	+0.1
2,532,379	+		PP_2223	0.28	-0.5
2,532,379	+		PP_2223	0.28	+0.2
2,532,379	+		PP_2223	0.28	-0.2
2,532,379	+		PP_2223	0.28	+0.2
2,532,379	+		PP_2223	0.28	+0.8
2,532,380	-		PP_2223	0.28	-0.1
2,532,380	-		PP_2223	0.28	-0.0
2,532,380	-		PP_2223	0.28	+0.3
2,532,380	-		PP_2223	0.28	+0.0
2,532,409	+		PP_2223	0.34	+0.4
2,532,409	+		PP_2223	0.34	+0.1
2,532,409	+		PP_2223	0.34	+0.4
2,532,409	+		PP_2223	0.34	-0.1
2,532,410	-		PP_2223	0.34	+1.2
2,532,410	-		PP_2223	0.34	+0.7
2,532,410	-		PP_2223	0.34	+0.8
2,532,410	-		PP_2223	0.34	-0.0
2,532,410	-		PP_2223	0.34	-1.3
2,532,410	-		PP_2223	0.34	-0.5
2,532,410	-		PP_2223	0.34	-0.1
2,532,443	+		PP_2223	0.40	-0.3
2,532,444	-		PP_2223	0.40	-1.0
2,532,562	+		PP_2223	0.63	-0.5
2,532,562	+		PP_2223	0.63	-1.1
2,532,563	-		PP_2223	0.63	+0.4
2,532,569	+		PP_2223	0.64	-0.4
2,532,569	+		PP_2223	0.64	-4.1
2,532,577	+		PP_2223	0.66	-0.2
2,532,577	+		PP_2223	0.66	-0.5
2,532,578	-		PP_2223	0.66	-1.4
2,532,615	-		PP_2223	0.73	-0.2
2,532,615	-		PP_2223	0.73	-0.1
2,532,615	-		PP_2223	0.73	-0.4
2,532,690	+		PP_2223	0.87	-0.5
2,532,691	-		PP_2223	0.87	-1.4
2,533,050	+		PP_2225	0.19	+0.0
2,533,051	-		PP_2225	0.19	-0.7
2,533,051	-		PP_2225	0.19	-2.1
2,533,231	+		PP_2225	0.68	+0.1
2,533,254	+		PP_2225	0.75	-0.9
2,533,255	-		PP_2225	0.75	+0.2
2,533,255	-		PP_2225	0.75	-0.4
2,533,255	-		PP_2225	0.75	-1.0
2,533,255	-		PP_2225	0.75	-1.4
2,533,256	+		PP_2225	0.75	-0.8
2,533,256	+		PP_2225	0.75	+0.9
2,533,257	-		PP_2225	0.75	-1.4
2,533,329	+				-1.2
2,533,434	+		PP_2226	0.33	-0.6
2,533,434	+		PP_2226	0.33	-1.2
2,533,491	+		PP_2226	0.53	-0.5
2,533,491	+		PP_2226	0.53	-0.3
2,533,492	-		PP_2226	0.53	-1.8
2,533,492	-		PP_2226	0.53	-1.1
2,533,492	-		PP_2226	0.53	+0.5
2,533,492	-		PP_2226	0.53	-2.1
2,533,492	-		PP_2226	0.53	-0.4
2,533,498	-		PP_2226	0.56	+0.6
2,533,498	-		PP_2226	0.56	-0.0
2,533,649	+				-0.0
2,533,649	+				-1.4
2,533,649	+				-1.2
2,533,649	+				+0.1
2,533,650	-				-0.4
2,533,650	-				+0.5
2,533,650	-				-0.3
2,533,650	-				-1.4
2,533,650	-				+0.4
2,533,669	+		PP_2227	0.10	-0.2
2,533,670	-		PP_2227	0.11	+1.7
2,533,670	-		PP_2227	0.11	-0.2
2,533,670	-		PP_2227	0.11	+0.9
2,533,670	-		PP_2227	0.11	+0.0
2,533,816	+		PP_2227	0.40	-2.1
2,533,816	+		PP_2227	0.40	-1.5
2,533,817	-		PP_2227	0.41	-1.5
2,533,817	-		PP_2227	0.41	+0.8
2,533,817	-		PP_2227	0.41	-0.6
2,533,817	-		PP_2227	0.41	-0.5
2,533,817	-		PP_2227	0.41	-2.6
2,533,817	-		PP_2227	0.41	-1.6
2,533,945	+		PP_2227	0.67	-0.3
2,534,119	-				+0.1
2,534,119	-				-0.2
2,534,171	+				-1.6
2,534,172	-				-1.9
2,534,172	-				+0.2
2,534,172	-				-0.8
2,534,173	+				+0.5
2,534,173	+				+1.2
2,534,173	+				+0.5
2,534,173	+				+0.2
2,534,173	+				-0.0
2,534,174	-				+0.4
2,534,174	-				+0.2
2,534,174	-				-0.0
2,534,174	-				-0.7
2,534,174	-				+1.5
2,534,174	-				-1.6
2,534,215	+				-1.4
2,534,290	+		PP_2228	0.11	-0.6
2,534,291	-		PP_2228	0.11	-0.1