Strain Fitness in Pseudomonas putida KT2440 around PP_1404

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,600,480	+		PP_1403	0.69	+0.1
1,600,481	-		PP_1403	0.69	+0.5
1,600,492	+		PP_1403	0.70	-0.4
1,600,492	+		PP_1403	0.70	+0.9
1,600,492	+		PP_1403	0.70	-1.0
1,600,502	-		PP_1403	0.70	-0.4
1,600,520	+		PP_1403	0.71	-0.3
1,600,520	+		PP_1403	0.71	-0.5
1,600,534	+		PP_1403	0.72	+0.7
1,600,561	+		PP_1403	0.73	-2.1
1,600,562	-		PP_1403	0.73	+0.4
1,600,562	-		PP_1403	0.73	+1.5
1,600,638	+		PP_1403	0.76	-0.4
1,600,638	+		PP_1403	0.76	-1.4
1,600,638	+		PP_1403	0.76	+0.0
1,600,639	-		PP_1403	0.76	+0.5
1,600,663	+		PP_1403	0.77	+0.2
1,600,663	+		PP_1403	0.77	+0.4
1,600,664	-		PP_1403	0.77	-0.3
1,600,954	+				+0.7
1,601,104	-				+0.1
1,601,104	-				-0.3
1,601,221	+				-0.9
1,601,222	-				+0.1
1,601,258	+				-0.4
1,601,259	-				+0.1
1,601,291	+				-0.3
1,601,291	+				-0.2
1,601,291	+				-0.1
1,601,301	+				-0.8
1,601,302	-				-0.4
1,601,343	+				+0.3
1,601,343	+				+1.1
1,601,344	-				+0.1
1,601,345	+				-0.1
1,601,345	+				+0.2
1,601,346	-				+0.2
1,601,346	-				-0.4
1,601,346	-				+0.3
1,601,346	-				-0.6
1,601,346	-				-0.3
1,601,388	+				-0.6
1,601,389	-				+0.8
1,601,389	-				+0.3
1,601,436	-		PP_1404	0.11	+0.6
1,601,481	+		PP_1404	0.18	+0.1
1,601,482	-		PP_1404	0.18	-0.3
1,601,487	+		PP_1404	0.19	+0.5
1,602,117	+				-1.5
1,602,117	+				-0.6
1,602,166	-				-1.2
1,602,347	-		PP_5469	0.16	+0.3
1,602,575	-		PP_5469	0.35	+1.0
1,602,766	+		PP_5469	0.50	-0.8
1,602,791	-		PP_5469	0.52	+1.7
1,602,791	-		PP_5469	0.52	-0.4
1,602,791	-		PP_5469	0.52	-0.9