Strain Fitness in Pseudomonas putida KT2440 around PP_0711

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0709 and PP_0710 are separated by 92 nucleotidesPP_0710 and PP_0711 are separated by 211 nucleotidesPP_0711 and PP_0712 are separated by 106 nucleotidesPP_0712 and PP_0713 are separated by 36 nucleotides PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116 _0709 PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598 _0710 PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430 _0711 PP_0712: PP_0712 - polyphosphate kinase 2, at 827,537 to 828,352 _0712 PP_0713: PP_0713 - Kef-type potassium/proton antiporter, CPA2 family, at 828,389 to 829,585 _0713 Position (kb) 826 827 828Strain fitness (log2 ratio) -2 -1 0 1 2at 825.830 kb on - strand, within PP_0709at 825.830 kb on - strand, within PP_0709at 826.141 kb on + strandat 826.142 kb on - strandat 826.199 kb on + strandat 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.410 kb on - strand, within PP_0710at 826.447 kb on + strand, within PP_0710at 826.777 kb on + strandat 826.778 kb on - strandat 826.853 kb on + strandat 826.955 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.380 kb on - strandat 827.410 kb on + strandat 827.410 kb on + strandat 827.428 kb on + strandat 827.429 kb on - strandat 827.495 kb on - strandat 827.495 kb on - strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.518 kb on + strandat 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.641 kb on - strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.763 kb on + strand, within PP_0712at 827.764 kb on - strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strandat 827.873 kb on + strand, within PP_0712at 827.874 kb on - strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.116 kb on + strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.214 kb on + strand, within PP_0712at 828.215 kb on - strand, within PP_0712at 828.238 kb on + strand, within PP_0712at 828.239 kb on - strand, within PP_0712at 828.245 kb on + strand, within PP_0712at 828.246 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.426 kb on + strandat 828.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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825,830 - PP_0709 0.81 +0.9
825,830 - PP_0709 0.81 -0.7
826,141 + -0.5
826,142 - -0.6
826,199 + -0.6
826,374 + PP_0710 0.42 -1.2
826,374 + PP_0710 0.42 -0.3
826,374 + PP_0710 0.42 -0.7
826,374 + PP_0710 0.42 +0.1
826,374 + PP_0710 0.42 +0.8
826,374 + PP_0710 0.42 -0.3
826,374 + PP_0710 0.42 -1.2
826,375 - PP_0710 0.43 -0.9
826,375 - PP_0710 0.43 -0.1
826,375 - PP_0710 0.43 +0.4
826,375 - PP_0710 0.43 +1.0
826,375 - PP_0710 0.43 +0.7
826,410 - PP_0710 0.52 -1.1
826,447 + PP_0710 0.61 -0.4
826,777 + +0.7
826,778 - +0.8
826,853 + +0.1
826,955 - PP_0711 0.23 -1.0
827,160 - PP_0711 0.56 -1.8
827,160 - PP_0711 0.56 -0.9
827,160 - PP_0711 0.56 +0.4
827,160 - PP_0711 0.56 -0.8
827,380 - -1.0
827,410 + -0.9
827,410 + +0.5
827,428 + +2.3
827,429 - +0.4
827,495 - +0.1
827,495 - +0.1
827,504 + +0.9
827,504 + +0.7
827,504 + -1.0
827,504 + -0.1
827,518 + +0.6
827,625 + PP_0712 0.11 -0.1
827,625 + PP_0712 0.11 +0.8
827,625 + PP_0712 0.11 +0.1
827,625 + PP_0712 0.11 +1.1
827,625 + PP_0712 0.11 -1.2
827,625 + PP_0712 0.11 +0.3
827,626 - PP_0712 0.11 -0.1
827,626 - PP_0712 0.11 -0.1
827,626 - PP_0712 0.11 +0.6
827,640 + PP_0712 0.13 +0.4
827,640 + PP_0712 0.13 +0.4
827,641 - PP_0712 0.13 +0.4
827,673 + PP_0712 0.17 +0.1
827,673 + PP_0712 0.17 +0.1
827,673 + PP_0712 0.17 +1.7
827,674 - PP_0712 0.17 +0.1
827,674 - PP_0712 0.17 -0.3
827,674 - PP_0712 0.17 -0.1
827,763 + PP_0712 0.28 +1.4
827,764 - PP_0712 0.28 -0.7
827,807 + PP_0712 0.33 -0.6
827,807 + PP_0712 0.33 +0.2
827,807 + PP_0712 0.33 -0.5
827,808 - PP_0712 0.33 -0.1
827,808 - PP_0712 0.33 +1.0
827,808 - PP_0712 0.33 +0.1
827,808 - +1.1
827,873 + PP_0712 0.41 -0.6
827,874 - PP_0712 0.41 -0.3
827,996 + PP_0712 0.56 +0.5
827,996 + PP_0712 0.56 -0.5
827,996 + PP_0712 0.56 +0.1
828,098 + PP_0712 0.69 -0.1
828,098 + PP_0712 0.69 +0.3
828,116 + PP_0712 0.71 +0.6
828,117 - PP_0712 0.71 +0.1
828,117 - PP_0712 0.71 +0.7
828,117 - PP_0712 0.71 -0.3
828,214 + PP_0712 0.83 -0.6
828,215 - PP_0712 0.83 +0.0
828,238 + PP_0712 0.86 +0.7
828,239 - PP_0712 0.86 -0.5
828,245 + PP_0712 0.87 +1.0
828,246 - PP_0712 0.87 -0.2
828,256 - PP_0712 0.88 +0.7
828,256 - PP_0712 0.88 -0.5
828,305 + +0.8
828,305 + +0.4
828,305 + +2.7
828,305 + +0.9
828,380 + +1.0
828,380 + +1.6
828,380 + +1.4
828,426 + -0.0
828,426 + -1.4

Or see this region's nucleotide sequence